Wall clock time and date at job start Mon Mar 30 2020 07:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 11 11 N 1.46902 * 109.47356 * 59.99769 * 9 7 2 12 12 C 1.50698 * 109.47166 * 179.97438 * 9 7 2 13 13 C 1.33394 * 122.54889 * 265.02842 * 12 9 7 14 14 S 1.75879 * 109.61058 * 180.02562 * 13 12 9 15 15 C 1.75883 * 90.97946 * 359.97438 * 14 13 12 16 16 C 1.33440 * 109.59155 * 359.73150 * 15 14 13 17 17 Br 1.89097 * 122.54308 * 180.23897 * 16 15 14 18 18 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 19 19 H 1.00903 * 110.99764 * 60.00010 * 11 9 7 20 20 H 1.00901 * 111.00185 * 183.94829 * 11 9 7 21 21 H 1.08007 * 125.18927 * 359.97197 * 13 12 9 22 22 H 1.07993 * 125.20509 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 1 3.8711 -0.6782 -0.9024 11 7 4.0062 -0.5045 1.1869 12 6 4.0138 -2.6149 -0.0170 13 6 4.3496 -3.2613 1.1005 14 16 4.8878 -4.8878 0.7026 15 6 4.6181 -4.5906 -1.0098 16 6 4.1559 -3.3506 -1.1814 17 35 3.7344 -2.6490 -2.8861 18 1 -0.4849 0.8401 0.0041 19 1 3.6862 -0.9641 2.0263 20 1 5.0127 -0.4345 1.1744 21 1 4.2994 -2.8485 2.0973 22 1 4.7947 -5.3042 -1.8009 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238599208.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:29 Heat of formation + Delta-G solvation = 44.886487 kcal Electronic energy + Delta-G solvation = -10538.440166 eV Core-core repulsion = 8459.843493 eV Total energy + Delta-G solvation = -2078.596673 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.25878 -34.06719 -31.77355 -30.45779 -28.19462 -26.64830 -23.67614 -20.83325 -17.99210 -17.42497 -16.75481 -15.18873 -14.61519 -14.02458 -13.12956 -13.06188 -12.79943 -12.24506 -12.06433 -11.43998 -10.86025 -10.71657 -10.31063 -10.16889 -9.98814 -9.61182 -9.24777 -8.50118 -8.30019 -7.85439 -7.27606 -5.96177 -4.05381 1.22128 1.54423 2.12963 2.71994 3.00456 3.54526 3.64177 3.94641 4.74139 5.13744 5.34224 5.58798 5.77118 5.90627 6.21819 6.47581 6.63016 7.01662 7.62046 8.14184 8.32700 8.69209 9.03464 9.67727 11.13648 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.023883 B = 0.011440 C = 0.008798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.123028 B = 2447.014781 C = 3181.693690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.088 3.912 3 Si 0.861 3.139 4 H -0.296 1.296 5 H -0.304 1.304 6 H -0.192 1.192 7 C -0.510 4.510 8 H 0.068 0.932 9 C 0.235 3.765 10 H 0.056 0.944 11 N -0.833 5.833 12 C -0.071 4.071 13 C -0.220 4.220 14 S 0.084 5.916 15 C -0.196 4.196 16 C -0.076 4.076 17 Br -0.026 7.026 18 H 0.262 0.738 19 H 0.329 0.671 20 H 0.308 0.692 21 H 0.164 0.836 22 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.359 -7.784 -2.332 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.116 4.116 3 Si 0.688 3.312 4 H -0.223 1.223 5 H -0.232 1.232 6 H -0.114 1.114 7 C -0.548 4.548 8 H 0.087 0.913 9 C 0.123 3.877 10 H 0.073 0.927 11 N -0.362 5.362 12 C -0.085 4.085 13 C -0.355 4.355 14 S 0.346 5.654 15 C -0.334 4.334 16 C -0.170 4.170 17 Br 0.058 6.942 18 H 0.072 0.928 19 H 0.143 0.857 20 H 0.120 0.880 21 H 0.181 0.819 22 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 11.165 -8.038 -2.343 13.956 hybrid contribution 0.130 0.808 -0.283 0.865 sum 11.295 -7.230 -2.626 13.666 Atomic orbital electron populations 1.69952 1.06902 1.27228 1.49509 1.24907 0.94439 0.99808 0.92410 0.87283 0.84703 0.81326 0.77930 1.22311 1.23187 1.11374 1.20544 0.86656 0.94472 1.53127 0.91340 1.18491 0.96613 0.81946 0.90687 0.92684 1.60056 1.12747 1.57676 1.05693 1.20160 0.96523 1.01914 0.89914 1.25136 1.11582 0.96406 1.02421 1.83918 1.66399 1.15249 0.99818 1.25522 1.08508 0.99447 0.99877 1.20735 1.06854 0.95699 0.93668 1.96641 1.93476 1.86478 1.17579 0.92846 0.85723 0.88033 0.81871 0.81603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.93 14 2 C 0.09 2.54 5.47 -17.82 -0.10 2.44 14 3 Si 0.86 21.53 26.94 -169.99 -4.58 16.95 14 4 H -0.30 -7.56 7.11 56.52 0.40 -7.16 14 5 H -0.30 -7.85 7.11 56.52 0.40 -7.45 14 6 H -0.19 -4.40 5.17 56.52 0.29 -4.11 14 7 C -0.51 -13.95 9.29 -34.44 -0.32 -14.27 14 8 H 0.07 2.10 7.98 -52.49 -0.42 1.68 14 9 C 0.23 5.25 2.02 -70.02 -0.14 5.11 14 10 H 0.06 1.30 6.81 -51.93 -0.35 0.94 14 11 N -0.83 -16.63 5.50 -6.65 -0.04 -16.67 14 12 C -0.07 -1.40 4.89 -106.23 -0.52 -1.92 14 13 C -0.22 -3.74 10.33 29.04 0.30 -3.44 14 14 S 0.08 1.20 23.34 -107.50 -2.51 -1.31 14 15 C -0.20 -3.02 11.05 29.05 0.32 -2.70 14 16 C -0.08 -1.40 6.16 -41.18 -0.25 -1.65 14 17 Br -0.03 -0.47 32.66 -68.01 -2.22 -2.69 14 18 H 0.26 7.68 8.31 -40.82 -0.34 7.34 14 19 H 0.33 6.26 7.57 -39.29 -0.30 5.96 14 20 H 0.31 5.30 9.06 -39.29 -0.36 4.95 14 21 H 0.16 2.52 6.89 -52.48 -0.36 2.16 14 22 H 0.17 2.11 8.06 -52.49 -0.42 1.69 14 LS Contribution 225.66 15.07 3.40 3.40 Total: -1.00 -30.33 225.66 -7.34 -37.66 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -1.45 Total: 6.01 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.71 Total: -16.43 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.74 Total: -43.60 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.58 Total: 16.95 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.51 Total: -1.31 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.22 Total: -2.69 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -30.33 -7.34 -37.66 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238599208.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.550 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds