Wall clock time and date at job start Mon Mar 30 2020 07:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 11 11 N 1.46902 * 109.47356 * 59.99769 * 9 7 2 12 12 C 1.50698 * 109.47166 * 179.97438 * 9 7 2 13 13 C 1.33394 * 122.54889 * 265.02842 * 12 9 7 14 14 S 1.75879 * 109.61058 * 180.02562 * 13 12 9 15 15 C 1.75883 * 90.97946 * 359.97438 * 14 13 12 16 16 C 1.33440 * 109.59155 * 359.73150 * 15 14 13 17 17 Br 1.89097 * 122.54308 * 180.23897 * 16 15 14 18 18 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 19 19 H 1.00903 * 110.99764 * 60.00010 * 11 9 7 20 20 H 1.00901 * 111.00185 * 183.94829 * 11 9 7 21 21 H 1.08007 * 125.18927 * 359.97197 * 13 12 9 22 22 H 1.07993 * 125.20509 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 1 3.8711 -0.6782 -0.9024 11 7 4.0062 -0.5045 1.1869 12 6 4.0138 -2.6149 -0.0170 13 6 4.3496 -3.2613 1.1005 14 16 4.8878 -4.8878 0.7026 15 6 4.6181 -4.5906 -1.0098 16 6 4.1559 -3.3506 -1.1814 17 35 3.7344 -2.6490 -2.8861 18 1 -0.4849 0.8401 0.0041 19 1 3.6862 -0.9641 2.0263 20 1 5.0127 -0.4345 1.1744 21 1 4.2994 -2.8485 2.0973 22 1 4.7947 -5.3042 -1.8009 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238599208.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:29 Heat of formation + Delta-G solvation = 23.588825 kcal Electronic energy + Delta-G solvation = -10539.363702 eV Core-core repulsion = 8459.843493 eV Total energy + Delta-G solvation = -2079.520209 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.68570 -35.77395 -33.80131 -31.85145 -29.54983 -28.52070 -25.33232 -22.43241 -19.40635 -18.98706 -18.57586 -16.77927 -16.27347 -15.90070 -14.74059 -14.42530 -14.37422 -13.93747 -13.58785 -13.07311 -12.68886 -12.40504 -12.08089 -11.61870 -11.60531 -11.39339 -10.98203 -10.66929 -9.64184 -9.14022 -8.93132 -8.17247 -6.27984 -0.06049 0.28764 0.84182 1.42835 1.54119 1.58825 1.60587 1.96195 2.65126 3.21616 3.93916 4.23766 4.28881 4.49727 4.77828 4.99193 5.18404 5.37234 5.69196 6.20124 6.52714 6.83973 7.06184 7.48311 8.96325 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.023883 B = 0.011440 C = 0.008798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.123028 B = 2447.014781 C = 3181.693690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.030 3.970 3 Si 0.917 3.083 4 H -0.304 1.304 5 H -0.317 1.317 6 H -0.153 1.153 7 C -0.495 4.495 8 H 0.022 0.978 9 C 0.245 3.755 10 H 0.045 0.955 11 N -0.836 5.836 12 C -0.104 4.104 13 C -0.227 4.227 14 S 0.168 5.832 15 C -0.190 4.190 16 C -0.109 4.109 17 Br -0.039 7.039 18 H 0.260 0.740 19 H 0.337 0.663 20 H 0.332 0.668 21 H 0.177 0.823 22 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.823 -8.756 -1.440 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.168 4.168 3 Si 0.743 3.257 4 H -0.232 1.232 5 H -0.245 1.245 6 H -0.073 1.073 7 C -0.534 4.534 8 H 0.040 0.960 9 C 0.132 3.868 10 H 0.063 0.937 11 N -0.366 5.366 12 C -0.118 4.118 13 C -0.363 4.363 14 S 0.431 5.569 15 C -0.328 4.328 16 C -0.203 4.203 17 Br 0.044 6.956 18 H 0.068 0.932 19 H 0.151 0.849 20 H 0.145 0.855 21 H 0.194 0.806 22 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 13.669 -9.036 -1.439 16.449 hybrid contribution -0.594 0.894 -0.509 1.188 sum 13.075 -8.142 -1.948 15.526 Atomic orbital electron populations 1.70102 1.08801 1.27767 1.52568 1.25764 0.94969 1.03450 0.92643 0.86495 0.84951 0.76736 0.77509 1.23230 1.24521 1.07287 1.20714 0.89590 0.92157 1.50898 0.95950 1.18030 0.93218 0.84458 0.91115 0.93748 1.59677 1.14529 1.57385 1.05043 1.19912 0.99355 1.01025 0.91520 1.25449 1.10090 0.98398 1.02332 1.83683 1.63836 1.11753 0.97641 1.25960 1.06173 0.98713 1.01963 1.20791 1.09454 0.97006 0.93008 1.96605 1.93777 1.86892 1.18293 0.93175 0.84873 0.85512 0.80565 0.78943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.68 13.96 21.45 0.30 -60.38 14 2 C 0.03 1.75 5.47 84.66 0.46 2.21 14 3 Si 0.92 44.64 26.94 68.60 1.85 46.48 14 4 H -0.30 -15.13 7.11 99.48 0.71 -14.43 14 5 H -0.32 -15.96 7.11 99.48 0.71 -15.26 14 6 H -0.15 -6.44 5.17 99.48 0.51 -5.92 14 7 C -0.50 -27.49 9.29 25.60 0.24 -27.25 14 8 H 0.02 1.42 7.98 -2.91 -0.02 1.39 14 9 C 0.24 10.69 2.02 43.42 0.09 10.78 14 10 H 0.04 2.05 6.81 -2.39 -0.02 2.03 14 11 N -0.84 -31.23 5.50 -174.96 -0.96 -32.19 14 12 C -0.10 -3.93 4.89 -20.91 -0.10 -4.03 14 13 C -0.23 -7.07 10.33 66.72 0.69 -6.38 14 14 S 0.17 4.11 23.34 -56.49 -1.32 2.79 14 15 C -0.19 -5.29 11.05 66.73 0.74 -4.56 14 16 C -0.11 -3.86 6.16 21.24 0.13 -3.72 14 17 Br -0.04 -1.42 32.66 -20.37 -0.67 -2.08 14 18 H 0.26 15.79 8.31 -92.71 -0.77 15.02 14 19 H 0.34 11.96 7.57 -89.69 -0.68 11.28 14 20 H 0.33 10.23 9.06 -89.69 -0.81 9.42 14 21 H 0.18 4.88 6.89 -2.91 -0.02 4.86 14 22 H 0.19 4.20 8.06 -2.91 -0.02 4.17 14 Total: -1.00 -66.79 225.66 1.03 -65.77 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -0.42 Total: 12.57 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 2.24 Total: -32.95 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -0.66 Total: -92.57 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.85 Total: 46.48 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.32 Total: 2.79 kcal Atomic # 35 Polarization: -1.42 SS G_CDS: -0.67 Total: -2.08 kcal Total: -66.79 1.03 -65.77 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238599208.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.355 kcal (2) G-P(sol) polarization free energy of solvation -66.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds