Wall clock time and date at job start Mon Mar 30 2020 07:31:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86807 * 119.99854 * 2 1
4 4 H 1.48493 * 109.46852 * 0.02562 * 3 2 1
5 5 H 1.48498 * 109.46913 * 120.00425 * 3 2 1
6 6 H 1.48501 * 109.47062 * 239.99984 * 3 2 1
7 7 C 1.37873 * 120.00390 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00598 * 187.10287 * 7 2 1
9 9 C 1.50706 * 120.00043 * 7.09772 * 7 2 1
10 10 H 1.09005 * 109.46626 * 35.56996 * 9 7 2
11 11 N 1.46897 * 109.47096 * 275.57500 * 9 7 2
12 12 C 1.50694 * 109.47276 * 155.56874 * 9 7 2
13 13 C 1.38176 * 120.00873 * 99.72562 * 12 9 7
14 14 C 1.38320 * 120.05725 * 179.78692 * 13 12 9
15 15 Cl 1.73593 * 119.96602 * 180.20967 * 14 13 12
16 16 C 1.38509 * 120.06821 * 0.46894 * 14 13 12
17 17 Cl 1.73604 * 119.98778 * 179.76388 * 16 14 13
18 18 C 1.38230 * 120.01998 * 359.78696 * 16 14 13
19 19 C 1.38707 * 120.01112 * 280.00072 * 12 9 7
20 20 O 1.35927 * 120.03414 * 0.02562 * 19 12 9
21 21 H 0.97006 * 120.00043 * 175.37416 * 1 2 3
22 22 H 1.00905 * 110.99840 * 306.92190 * 11 9 7
23 23 H 1.00899 * 111.00679 * 70.87658 * 11 9 7
24 24 H 1.08001 * 119.97502 * 0.02615 * 13 12 9
25 25 H 1.08002 * 120.02817 * 179.97438 * 18 16 14
26 26 H 0.96697 * 113.99981 * 89.99627 * 20 19 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 1.2840 2.7464 0.0006
5 1 3.1029 1.6964 1.2124
6 1 3.1028 1.6965 -1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0783 -1.1976 0.1151
9 6 1.2598 -2.4941 -0.1624
10 1 0.4230 -2.3507 -0.8461
11 7 0.7542 -2.9348 1.1446
12 6 2.1904 -3.5401 -0.7198
13 6 2.7730 -4.4668 0.1235
14 6 3.6238 -5.4300 -0.3877
15 17 4.3502 -6.5964 0.6731
16 6 3.9011 -5.4616 -1.7444
17 17 4.9742 -6.6678 -2.3829
18 6 3.3241 -4.5328 -2.5900
19 6 2.4668 -3.5694 -2.0787
20 8 1.8991 -2.6546 -2.9084
21 1 -0.4850 -0.8374 -0.0678
22 1 1.4964 -2.9662 1.8275
23 1 -0.0010 -2.3437 1.4583
24 1 2.5608 -4.4413 1.1821
25 1 3.5406 -4.5570 -3.6478
26 1 2.4208 -1.8482 -3.0206
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238615162.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:31:27
Heat of formation + Delta-G solvation = -43.667688 kcal
Electronic energy + Delta-G solvation = -15200.136263 eV
Core-core repulsion = 12330.083572 eV
Total energy + Delta-G solvation = -2870.052691 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 261.006 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-39.64908 -37.01041 -36.32754 -35.77062 -34.88001 -31.80275 -29.79775 -29.10564
-25.76222 -23.35669 -22.30814 -20.56743 -18.14220 -17.15327 -16.49104 -16.10456
-14.97860 -14.81883 -13.99636 -13.88183 -13.44007 -13.13896 -12.89665 -12.64010
-12.14050 -11.96476 -11.69522 -11.00088 -10.87382 -10.82011 -10.67538 -10.42338
-10.27533 -9.83577 -9.60519 -8.85684 -8.51230 -8.09997 -7.47286 -6.60659
-4.43273 1.28354 1.45301 2.06060 2.43216 3.26983 3.28969 3.47866
3.73547 4.31039 4.68855 4.95340 5.06782 5.29891 5.52501 5.76588
5.97439 6.08208 6.18200 6.47430 6.60143 6.90335 7.17184 7.69854
8.05233 8.08947 8.29173 8.48790 8.57229 9.30996 10.71696
Molecular weight = 261.01amu
Principal moments of inertia in cm(-1)
A = 0.028296 B = 0.006353 C = 0.005844
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 989.286706 B = 4406.297973 C = 4790.119267
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.033 3.967
3 Si 1.067 2.933
4 H -0.281 1.281
5 H -0.288 1.288
6 H -0.286 1.286
7 C -0.630 4.630
8 H 0.050 0.950
9 C 0.225 3.775
10 H 0.065 0.935
11 N -0.856 5.856
12 C -0.031 4.031
13 C -0.081 4.081
14 C -0.039 4.039
15 Cl -0.067 7.067
16 C -0.039 4.039
17 Cl -0.067 7.067
18 C -0.133 4.133
19 C 0.125 3.875
20 O -0.485 6.485
21 H 0.273 0.727
22 H 0.323 0.677
23 H 0.335 0.665
24 H 0.146 0.854
25 H 0.139 0.861
26 H 0.396 0.604
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.447 -8.065 -2.578 11.276
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.174 4.174
3 Si 0.895 3.105
4 H -0.206 1.206
5 H -0.214 1.214
6 H -0.212 1.212
7 C -0.669 4.669
8 H 0.068 0.932
9 C 0.116 3.884
10 H 0.083 0.917
11 N -0.383 5.383
12 C -0.033 4.033
13 C -0.100 4.100
14 C -0.067 4.067
15 Cl -0.038 7.038
16 C -0.066 4.066
17 Cl -0.039 7.039
18 C -0.152 4.152
19 C 0.079 3.921
20 O -0.296 6.296
21 H 0.084 0.916
22 H 0.134 0.866
23 H 0.147 0.853
24 H 0.163 0.837
25 H 0.157 0.843
26 H 0.253 0.747
Dipole moment (debyes) X Y Z Total
from point charges 6.742 -7.737 -2.919 10.669
hybrid contribution 1.148 -0.547 0.266 1.300
sum 7.890 -8.285 -2.652 11.744
Atomic orbital electron populations
1.70841 1.06839 1.31387 1.44045 1.25888 0.96333 1.02598 0.92613
0.83549 0.74971 0.75227 0.76750 1.20631 1.21397 1.21215 1.22419
0.95569 0.91852 1.57104 0.93152 1.18098 0.92765 0.88662 0.88840
0.91700 1.59545 1.14130 1.58613 1.06040 1.20826 0.96056 0.94729
0.91659 1.20797 0.95038 0.92639 1.01504 1.20737 1.01009 0.95744
0.89193 1.98342 1.82192 1.57851 1.65394 1.20285 0.99418 0.95377
0.91529 1.98342 1.63662 1.55146 1.86702 1.21121 0.97980 0.96028
1.00096 1.18122 0.93722 0.91688 0.88595 1.84708 1.49247 1.30224
1.65427 0.91568 0.86620 0.85264 0.83673 0.84274 0.74698
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.32 13.63 55.43 0.76 -23.57 15
2 C 0.03 0.84 5.45 -17.82 -0.10 0.74 15
3 Si 1.07 22.82 29.91 -169.99 -5.08 17.74 15
4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15
5 H -0.29 -6.01 7.11 56.52 0.40 -5.60 15
6 H -0.29 -5.80 7.11 56.52 0.40 -5.40 15
7 C -0.63 -15.49 8.51 -34.44 -0.29 -15.78 15
8 H 0.05 1.27 7.81 -52.48 -0.41 0.86 15
9 C 0.23 5.13 2.21 -70.02 -0.16 4.98 15
10 H 0.07 1.66 6.76 -51.93 -0.35 1.31 15
11 N -0.86 -18.02 8.52 -6.65 -0.06 -18.08 15
12 C -0.03 -0.63 5.08 -104.47 -0.53 -1.16 15
13 C -0.08 -1.49 9.05 -39.57 -0.36 -1.84 15
14 C -0.04 -0.67 6.32 -39.45 -0.25 -0.92 15
15 Cl -0.07 -1.00 27.95 -51.86 -1.45 -2.45 15
16 C -0.04 -0.63 6.32 -39.48 -0.25 -0.88 15
17 Cl -0.07 -0.95 27.96 -51.86 -1.45 -2.40 15
18 C -0.13 -2.17 9.77 -39.40 -0.38 -2.55 15
19 C 0.12 2.34 6.67 -39.23 -0.26 2.07 15
20 O -0.49 -8.96 12.74 -19.51 -0.25 -9.21 15
21 H 0.27 7.39 6.21 -40.82 -0.25 7.13 15
22 H 0.32 6.47 7.63 -39.29 -0.30 6.17 15
23 H 0.34 7.33 8.43 -39.29 -0.33 6.99 15
24 H 0.15 2.59 6.43 -52.49 -0.34 2.26 15
25 H 0.14 1.95 8.06 -52.49 -0.42 1.53 15
26 H 0.40 6.12 9.06 45.56 0.41 6.54 15
LS Contribution 261.80 15.07 3.95 3.95
Total: -1.00 -26.36 261.80 -6.96 -33.32
By element:
Atomic # 1 Polarization: 16.83 SS G_CDS: -0.79 Total: 16.04 kcal
Atomic # 6 Polarization: -12.76 SS G_CDS: -2.58 Total: -15.33 kcal
Atomic # 7 Polarization: -42.35 SS G_CDS: 0.70 Total: -41.65 kcal
Atomic # 8 Polarization: -8.96 SS G_CDS: -0.25 Total: -9.21 kcal
Atomic # 14 Polarization: 22.82 SS G_CDS: -5.08 Total: 17.74 kcal
Atomic # 17 Polarization: -1.95 SS G_CDS: -2.90 Total: -4.85 kcal
Total LS contribution 3.95 Total: 3.95 kcal
Total: -26.36 -6.96 -33.32 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238615162.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.352 kcal
(2) G-P(sol) polarization free energy of solvation -26.360 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.712 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.316 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds