Wall clock time and date at job start Mon Mar 30 2020 07:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99854 * 2 1 4 4 H 1.48493 * 109.46852 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46913 * 120.00425 * 3 2 1 6 6 H 1.48501 * 109.47062 * 239.99984 * 3 2 1 7 7 C 1.37873 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00598 * 187.10287 * 7 2 1 9 9 C 1.50706 * 120.00043 * 7.09772 * 7 2 1 10 10 H 1.09005 * 109.46626 * 35.56996 * 9 7 2 11 11 N 1.46897 * 109.47096 * 275.57500 * 9 7 2 12 12 C 1.50694 * 109.47276 * 155.56874 * 9 7 2 13 13 C 1.38176 * 120.00873 * 99.72562 * 12 9 7 14 14 C 1.38320 * 120.05725 * 179.78692 * 13 12 9 15 15 Cl 1.73593 * 119.96602 * 180.20967 * 14 13 12 16 16 C 1.38509 * 120.06821 * 0.46894 * 14 13 12 17 17 Cl 1.73604 * 119.98778 * 179.76388 * 16 14 13 18 18 C 1.38230 * 120.01998 * 359.78696 * 16 14 13 19 19 C 1.38707 * 120.01112 * 280.00072 * 12 9 7 20 20 O 1.35927 * 120.03414 * 0.02562 * 19 12 9 21 21 H 0.97006 * 120.00043 * 175.37416 * 1 2 3 22 22 H 1.00905 * 110.99840 * 306.92190 * 11 9 7 23 23 H 1.00899 * 111.00679 * 70.87658 * 11 9 7 24 24 H 1.08001 * 119.97502 * 0.02615 * 13 12 9 25 25 H 1.08002 * 120.02817 * 179.97438 * 18 16 14 26 26 H 0.96697 * 113.99981 * 89.99627 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0783 -1.1976 0.1151 9 6 1.2598 -2.4941 -0.1624 10 1 0.4230 -2.3507 -0.8461 11 7 0.7542 -2.9348 1.1446 12 6 2.1904 -3.5401 -0.7198 13 6 2.7730 -4.4668 0.1235 14 6 3.6238 -5.4300 -0.3877 15 17 4.3502 -6.5964 0.6731 16 6 3.9011 -5.4616 -1.7444 17 17 4.9742 -6.6678 -2.3829 18 6 3.3241 -4.5328 -2.5900 19 6 2.4668 -3.5694 -2.0787 20 8 1.8991 -2.6546 -2.9084 21 1 -0.4850 -0.8374 -0.0678 22 1 1.4964 -2.9662 1.8275 23 1 -0.0010 -2.3437 1.4583 24 1 2.5608 -4.4413 1.1821 25 1 3.5406 -4.5570 -3.6478 26 1 2.4208 -1.8482 -3.0206 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238615162.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:27 Heat of formation + Delta-G solvation = -43.667688 kcal Electronic energy + Delta-G solvation = -15200.136263 eV Core-core repulsion = 12330.083572 eV Total energy + Delta-G solvation = -2870.052691 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.006 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64908 -37.01041 -36.32754 -35.77062 -34.88001 -31.80275 -29.79775 -29.10564 -25.76222 -23.35669 -22.30814 -20.56743 -18.14220 -17.15327 -16.49104 -16.10456 -14.97860 -14.81883 -13.99636 -13.88183 -13.44007 -13.13896 -12.89665 -12.64010 -12.14050 -11.96476 -11.69522 -11.00088 -10.87382 -10.82011 -10.67538 -10.42338 -10.27533 -9.83577 -9.60519 -8.85684 -8.51230 -8.09997 -7.47286 -6.60659 -4.43273 1.28354 1.45301 2.06060 2.43216 3.26983 3.28969 3.47866 3.73547 4.31039 4.68855 4.95340 5.06782 5.29891 5.52501 5.76588 5.97439 6.08208 6.18200 6.47430 6.60143 6.90335 7.17184 7.69854 8.05233 8.08947 8.29173 8.48790 8.57229 9.30996 10.71696 Molecular weight = 261.01amu Principal moments of inertia in cm(-1) A = 0.028296 B = 0.006353 C = 0.005844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.286706 B = 4406.297973 C = 4790.119267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.033 3.967 3 Si 1.067 2.933 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.630 4.630 8 H 0.050 0.950 9 C 0.225 3.775 10 H 0.065 0.935 11 N -0.856 5.856 12 C -0.031 4.031 13 C -0.081 4.081 14 C -0.039 4.039 15 Cl -0.067 7.067 16 C -0.039 4.039 17 Cl -0.067 7.067 18 C -0.133 4.133 19 C 0.125 3.875 20 O -0.485 6.485 21 H 0.273 0.727 22 H 0.323 0.677 23 H 0.335 0.665 24 H 0.146 0.854 25 H 0.139 0.861 26 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.447 -8.065 -2.578 11.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.174 4.174 3 Si 0.895 3.105 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.669 4.669 8 H 0.068 0.932 9 C 0.116 3.884 10 H 0.083 0.917 11 N -0.383 5.383 12 C -0.033 4.033 13 C -0.100 4.100 14 C -0.067 4.067 15 Cl -0.038 7.038 16 C -0.066 4.066 17 Cl -0.039 7.039 18 C -0.152 4.152 19 C 0.079 3.921 20 O -0.296 6.296 21 H 0.084 0.916 22 H 0.134 0.866 23 H 0.147 0.853 24 H 0.163 0.837 25 H 0.157 0.843 26 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 6.742 -7.737 -2.919 10.669 hybrid contribution 1.148 -0.547 0.266 1.300 sum 7.890 -8.285 -2.652 11.744 Atomic orbital electron populations 1.70841 1.06839 1.31387 1.44045 1.25888 0.96333 1.02598 0.92613 0.83549 0.74971 0.75227 0.76750 1.20631 1.21397 1.21215 1.22419 0.95569 0.91852 1.57104 0.93152 1.18098 0.92765 0.88662 0.88840 0.91700 1.59545 1.14130 1.58613 1.06040 1.20826 0.96056 0.94729 0.91659 1.20797 0.95038 0.92639 1.01504 1.20737 1.01009 0.95744 0.89193 1.98342 1.82192 1.57851 1.65394 1.20285 0.99418 0.95377 0.91529 1.98342 1.63662 1.55146 1.86702 1.21121 0.97980 0.96028 1.00096 1.18122 0.93722 0.91688 0.88595 1.84708 1.49247 1.30224 1.65427 0.91568 0.86620 0.85264 0.83673 0.84274 0.74698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 13.63 55.43 0.76 -23.57 15 2 C 0.03 0.84 5.45 -17.82 -0.10 0.74 15 3 Si 1.07 22.82 29.91 -169.99 -5.08 17.74 15 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.29 -6.01 7.11 56.52 0.40 -5.60 15 6 H -0.29 -5.80 7.11 56.52 0.40 -5.40 15 7 C -0.63 -15.49 8.51 -34.44 -0.29 -15.78 15 8 H 0.05 1.27 7.81 -52.48 -0.41 0.86 15 9 C 0.23 5.13 2.21 -70.02 -0.16 4.98 15 10 H 0.07 1.66 6.76 -51.93 -0.35 1.31 15 11 N -0.86 -18.02 8.52 -6.65 -0.06 -18.08 15 12 C -0.03 -0.63 5.08 -104.47 -0.53 -1.16 15 13 C -0.08 -1.49 9.05 -39.57 -0.36 -1.84 15 14 C -0.04 -0.67 6.32 -39.45 -0.25 -0.92 15 15 Cl -0.07 -1.00 27.95 -51.86 -1.45 -2.45 15 16 C -0.04 -0.63 6.32 -39.48 -0.25 -0.88 15 17 Cl -0.07 -0.95 27.96 -51.86 -1.45 -2.40 15 18 C -0.13 -2.17 9.77 -39.40 -0.38 -2.55 15 19 C 0.12 2.34 6.67 -39.23 -0.26 2.07 15 20 O -0.49 -8.96 12.74 -19.51 -0.25 -9.21 15 21 H 0.27 7.39 6.21 -40.82 -0.25 7.13 15 22 H 0.32 6.47 7.63 -39.29 -0.30 6.17 15 23 H 0.34 7.33 8.43 -39.29 -0.33 6.99 15 24 H 0.15 2.59 6.43 -52.49 -0.34 2.26 15 25 H 0.14 1.95 8.06 -52.49 -0.42 1.53 15 26 H 0.40 6.12 9.06 45.56 0.41 6.54 15 LS Contribution 261.80 15.07 3.95 3.95 Total: -1.00 -26.36 261.80 -6.96 -33.32 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.79 Total: 16.04 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -2.58 Total: -15.33 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.70 Total: -41.65 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.25 Total: -9.21 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.08 Total: 17.74 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -2.90 Total: -4.85 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.36 -6.96 -33.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238615162.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.352 kcal (2) G-P(sol) polarization free energy of solvation -26.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds