Wall clock time and date at job start Mon Mar 30 2020 07:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 11 11 N 1.46892 * 109.47371 * 299.99695 * 9 7 2 12 12 C 1.50707 * 109.46656 * 179.97438 * 9 7 2 13 13 C 1.33361 * 122.53573 * 80.02698 * 12 9 7 14 14 S 1.75875 * 109.61747 * 180.02562 * 13 12 9 15 15 C 1.75879 * 90.97896 * 359.97438 * 14 13 12 16 16 Br 1.89095 * 125.21113 * 180.02562 * 15 14 13 17 17 C 1.33486 * 109.58212 * 359.73316 * 15 14 13 18 18 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 19 19 H 1.00903 * 110.99815 * 176.05001 * 11 9 7 20 20 H 1.00896 * 111.00150 * 299.99781 * 11 9 7 21 21 H 1.08004 * 125.19154 * 359.96375 * 13 12 9 22 22 H 1.07997 * 122.55125 * 180.24226 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8753 -0.6803 0.8889 11 7 4.0007 -0.5012 -1.2005 12 6 4.0140 -2.6148 -0.0010 13 6 4.0690 -3.3562 -1.1082 14 16 4.7041 -4.9498 -0.7207 15 6 4.8649 -4.5069 0.9738 16 35 5.5208 -5.6389 2.3391 17 6 4.4590 -3.2471 1.1474 18 1 -0.4849 0.8401 -0.0004 19 1 5.0073 -0.4311 -1.1924 20 1 3.6770 -0.9586 -2.0396 21 1 3.7685 -3.0283 -2.0924 22 1 4.4727 -2.7598 2.1111 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238624403.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:36 Heat of formation + Delta-G solvation = 40.155717 kcal Electronic energy + Delta-G solvation = -10309.374193 eV Core-core repulsion = 8230.572378 eV Total energy + Delta-G solvation = -2078.801815 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.20562 -34.13235 -31.92493 -31.12765 -27.82898 -26.65900 -23.81422 -20.78576 -18.39951 -17.32576 -16.63693 -15.19566 -14.62361 -14.05753 -13.17892 -13.03725 -12.79361 -12.43540 -12.12310 -11.50864 -11.03430 -10.88462 -10.69287 -10.18937 -10.08150 -9.94819 -9.29678 -8.57272 -8.36027 -7.93396 -7.28723 -6.03475 -4.14332 1.14197 1.32137 2.03310 2.26874 3.11715 3.49076 3.59736 3.90070 4.67639 5.26027 5.50011 5.68891 5.81442 5.89149 6.27039 6.49222 6.71640 7.05179 7.54515 8.10394 8.27934 8.64420 8.96664 9.59959 11.06064 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.041542 B = 0.006319 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.852551 B = 4430.233970 C = 4649.108080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.085 3.915 3 Si 0.866 3.134 4 H -0.297 1.297 5 H -0.192 1.192 6 H -0.304 1.304 7 C -0.521 4.521 8 H 0.070 0.930 9 C 0.239 3.761 10 H 0.048 0.952 11 N -0.832 5.832 12 C -0.091 4.091 13 C -0.197 4.197 14 S 0.103 5.897 15 C -0.211 4.211 16 Br -0.011 7.011 17 C -0.069 4.069 18 H 0.263 0.737 19 H 0.309 0.691 20 H 0.329 0.671 21 H 0.165 0.835 22 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.992 -10.253 1.532 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.119 4.119 3 Si 0.693 3.307 4 H -0.224 1.224 5 H -0.113 1.113 6 H -0.231 1.231 7 C -0.560 4.560 8 H 0.088 0.912 9 C 0.127 3.873 10 H 0.065 0.935 11 N -0.361 5.361 12 C -0.105 4.105 13 C -0.333 4.333 14 S 0.365 5.635 15 C -0.406 4.406 16 Br 0.073 6.927 17 C -0.104 4.104 18 H 0.073 0.927 19 H 0.120 0.880 20 H 0.143 0.857 21 H 0.183 0.817 22 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.983 -11.275 1.429 17.255 hybrid contribution 0.058 1.334 0.413 1.398 sum 13.040 -9.941 1.842 16.501 Atomic orbital electron populations 1.69956 1.06979 1.27418 1.49102 1.24991 0.94523 1.00092 0.92312 0.87205 0.84606 0.81008 0.77864 1.22422 1.11350 1.23102 1.20716 0.87096 0.94571 1.53586 0.91232 1.18361 0.96294 0.82135 0.90548 0.93455 1.60071 1.12825 1.57536 1.05639 1.20257 0.97620 1.01793 0.90796 1.25418 1.08817 0.95572 1.03498 1.83947 1.64592 1.15895 0.99081 1.25869 1.17366 0.99767 0.97646 1.96599 1.86088 1.63380 1.46682 1.20283 0.97191 0.92198 1.00754 0.92723 0.87989 0.85720 0.81726 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.61 14 2 C 0.09 2.42 5.47 -17.82 -0.10 2.32 14 3 Si 0.87 21.09 26.94 -169.99 -4.58 16.51 14 4 H -0.30 -7.36 7.11 56.52 0.40 -6.96 14 5 H -0.19 -4.27 5.17 56.52 0.29 -3.98 14 6 H -0.30 -7.66 7.11 56.52 0.40 -7.26 14 7 C -0.52 -14.11 9.29 -34.44 -0.32 -14.43 14 8 H 0.07 2.10 7.98 -52.49 -0.42 1.68 14 9 C 0.24 5.18 2.43 -70.02 -0.17 5.01 14 10 H 0.05 1.05 7.51 -51.93 -0.39 0.66 14 11 N -0.83 -16.13 5.68 -6.65 -0.04 -16.17 14 12 C -0.09 -1.72 4.79 -106.24 -0.51 -2.23 14 13 C -0.20 -3.36 10.41 29.03 0.30 -3.05 14 14 S 0.10 1.55 23.34 -107.50 -2.51 -0.96 14 15 C -0.21 -3.38 6.97 29.07 0.20 -3.18 14 16 Br -0.01 -0.15 34.07 -68.01 -2.32 -2.47 14 17 C -0.07 -1.22 9.88 -41.17 -0.41 -1.63 14 18 H 0.26 7.61 8.31 -40.82 -0.34 7.27 14 19 H 0.31 5.14 9.06 -39.29 -0.36 4.79 14 20 H 0.33 6.10 7.73 -39.29 -0.30 5.80 14 21 H 0.17 2.62 7.18 -52.48 -0.38 2.24 14 22 H 0.14 2.42 8.06 -52.49 -0.42 2.00 14 LS Contribution 228.44 15.07 3.44 3.44 Total: -1.00 -29.45 228.44 -7.74 -37.19 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -1.51 Total: 6.25 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -1.00 Total: -17.19 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.74 Total: -42.78 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.58 Total: 16.51 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.51 Total: -0.96 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -2.32 Total: -2.47 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.45 -7.74 -37.19 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238624403.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.346 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds