Wall clock time and date at job start Mon Mar 30 2020 07:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29490 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48501 * 109.47067 * 89.99970 * 3 2 1 5 5 H 1.48505 * 109.47089 * 210.00060 * 3 2 1 6 6 H 1.48503 * 109.47103 * 329.99953 * 3 2 1 7 7 C 1.46575 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99837 * 16.37459 * 7 2 1 9 9 C 1.40169 * 119.99549 * 196.37107 * 7 2 1 10 10 C 1.41311 * 120.30621 * 27.21047 * 9 7 2 11 11 C 1.36442 * 119.82039 * 179.75590 * 10 9 7 12 12 Cl 1.73596 * 119.77390 * 180.27299 * 11 10 9 13 13 C 1.39050 * 120.45633 * 0.52350 * 11 10 9 14 14 C 1.38584 * 120.62641 * 359.72906 * 13 11 10 15 15 N 1.48015 * 119.91983 * 180.02562 * 14 13 11 16 16 O 1.31698 * 120.00037 * 359.97438 * 15 14 13 17 17 O 1.31701 * 120.00019 * 179.97438 * 15 14 13 18 18 C 1.37799 * 120.16184 * 0.02562 * 14 13 11 19 19 Cl 1.73598 * 120.22743 * 180.02562 * 18 14 13 20 20 H 0.97001 * 119.99769 * 175.32158 * 1 2 3 21 21 H 1.07997 * 120.09351 * 0.02562 * 10 9 7 22 22 H 1.07999 * 119.68370 * 179.75080 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2289 1.6177 0.0000 4 1 2.4764 2.0464 1.4001 5 1 3.5265 1.4401 -0.7001 6 1 1.4263 2.6526 -0.7001 7 6 2.0278 -1.2694 -0.0006 8 1 1.5206 -2.1855 -0.2646 9 6 3.3868 -1.2941 0.3416 10 6 3.9229 -0.3116 1.2042 11 6 5.2462 -0.3479 1.5347 12 17 5.9020 0.8555 2.6002 13 6 6.0743 -1.3392 1.0199 14 6 5.5694 -2.3089 0.1681 15 7 6.4649 -3.3573 -0.3704 16 8 7.7398 -3.3675 -0.0404 17 8 5.9866 -4.2798 -1.1795 18 6 4.2358 -2.2995 -0.1786 19 17 3.6014 -3.5137 -1.2449 20 1 -0.4850 -0.8373 -0.0685 21 1 3.2861 0.4635 1.6043 22 1 7.1207 -1.3538 1.2865 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247746613.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:31 Heat of formation + Delta-G solvation = 10.662003 kcal Electronic energy + Delta-G solvation = -14918.170076 eV Core-core repulsion = 11914.640202 eV Total energy + Delta-G solvation = -3003.529873 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.975 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.92736 -39.36212 -37.75382 -37.16104 -35.96382 -35.50173 -33.15970 -31.95139 -27.76926 -27.24354 -23.54398 -22.94117 -20.93797 -19.22235 -19.06131 -17.91485 -17.15198 -16.97260 -16.38179 -15.70046 -15.27377 -14.74942 -14.51497 -13.67884 -13.43347 -13.26842 -13.05314 -12.79096 -12.41179 -12.30520 -12.02457 -11.97842 -11.81666 -11.73352 -11.34768 -11.04023 -10.46188 -9.92823 -9.66085 -6.98217 -1.73909 0.02306 0.03096 0.27776 0.94377 1.28087 1.30413 1.42675 1.66500 1.94015 2.07341 2.78350 3.65113 3.86907 3.94898 4.09652 4.53929 4.62524 4.86168 5.00079 5.01919 5.21161 5.67805 5.73483 5.89240 6.13444 7.50823 Molecular weight = 260.97amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.011150 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.792111 B = 2510.561544 C = 3925.797489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.024 3.976 3 Si 1.075 2.925 4 H -0.236 1.236 5 H -0.254 1.254 6 H -0.264 1.264 7 C -0.468 4.468 8 H 0.087 0.913 9 C 0.084 3.916 10 C -0.200 4.200 11 C 0.035 3.965 12 Cl -0.048 7.048 13 C -0.200 4.200 14 C 0.062 3.938 15 N -0.014 5.014 16 O -0.196 6.196 17 O -0.180 6.180 18 C -0.117 4.117 19 Cl -0.040 7.040 20 H 0.301 0.699 21 H 0.146 0.854 22 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.107 4.139 2.537 5.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.204 4.204 3 Si 0.892 3.108 4 H -0.161 1.161 5 H -0.178 1.178 6 H -0.189 1.189 7 C -0.492 4.492 8 H 0.105 0.895 9 C 0.079 3.921 10 C -0.220 4.220 11 C 0.007 3.993 12 Cl -0.019 7.019 13 C -0.221 4.221 14 C -0.025 4.025 15 N 0.462 4.538 16 O -0.386 6.386 17 O -0.373 6.373 18 C -0.147 4.147 19 Cl -0.011 7.011 20 H 0.114 0.886 21 H 0.163 0.837 22 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.374 6.126 2.815 7.148 hybrid contribution 0.097 -2.580 -0.337 2.604 sum 2.471 3.546 2.478 4.982 Atomic orbital electron populations 1.70036 1.08933 1.34760 1.23296 1.29903 0.95394 1.05948 0.89149 0.83644 0.75767 0.70454 0.80900 1.16051 1.17811 1.18935 1.22234 0.93558 0.97063 1.36381 0.89519 1.17225 0.92992 0.89842 0.92027 1.21218 0.94443 1.03731 1.02622 1.19926 0.92535 0.91804 0.95028 1.98340 1.86120 1.54068 1.63370 1.20076 1.01784 0.96412 1.03855 1.19865 0.87421 0.91648 1.03616 1.50640 1.02937 1.01684 0.98586 1.96175 0.94914 1.82853 1.64675 1.96277 1.79456 1.30859 1.30698 1.20983 0.90329 1.00006 1.03357 1.98314 1.87148 1.52744 1.62875 0.88565 0.83702 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -31.92 13.58 23.22 0.32 -31.60 14 2 C 0.02 0.99 5.61 87.21 0.49 1.48 14 3 Si 1.07 36.88 24.97 68.60 1.71 38.60 14 4 H -0.24 -7.15 6.53 99.48 0.65 -6.50 14 5 H -0.25 -8.82 6.96 99.48 0.69 -8.13 14 6 H -0.26 -8.68 7.11 99.48 0.71 -7.97 14 7 C -0.47 -20.55 9.17 24.92 0.23 -20.32 14 8 H 0.09 4.00 7.34 -2.91 -0.02 3.98 14 9 C 0.08 3.60 5.26 -21.25 -0.11 3.49 14 10 C -0.20 -7.71 7.04 22.61 0.16 -7.55 14 11 C 0.03 1.25 6.27 22.05 0.14 1.39 14 12 Cl -0.05 -1.40 28.93 -2.72 -0.08 -1.48 14 13 C -0.20 -7.52 9.37 22.55 0.21 -7.31 14 14 C 0.06 2.61 6.88 36.35 0.25 2.86 14 15 N -0.01 -0.59 4.98 -46.51 -0.23 -0.82 14 16 O -0.20 -8.22 19.14 3.52 0.07 -8.16 14 17 O -0.18 -7.94 16.59 3.51 0.06 -7.88 14 18 C -0.12 -5.10 6.40 22.97 0.15 -4.96 14 19 Cl -0.04 -1.68 24.48 -2.72 -0.07 -1.75 14 20 H 0.30 12.45 8.74 -92.71 -0.81 11.64 14 21 H 0.15 5.19 4.21 -2.91 -0.01 5.18 14 22 H 0.16 5.37 7.56 -2.91 -0.02 5.34 14 Total: -1.00 -44.94 237.11 4.47 -40.47 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.18 Total: 3.54 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 1.51 Total: -30.92 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.08 Total: -32.42 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.13 Total: -16.04 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 1.71 Total: 38.60 kcal Atomic # 17 Polarization: -3.08 SS G_CDS: -0.15 Total: -3.23 kcal Total: -44.94 4.47 -40.47 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247746613.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.131 kcal (2) G-P(sol) polarization free energy of solvation -44.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds