Wall clock time and date at job start Mon Mar 30 2020 06:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47134 * 2 1 4 4 C 1.50700 * 109.46952 * 240.00341 * 2 1 3 5 5 H 1.07997 * 119.99980 * 239.99951 * 4 2 1 6 6 C 1.37880 * 119.99941 * 60.00006 * 4 2 1 7 7 N 1.31517 * 120.00083 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99862 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47059 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47223 * 119.99945 * 8 6 4 11 11 H 1.48501 * 109.46628 * 240.00011 * 8 6 4 12 12 N 1.46896 * 109.47282 * 120.00521 * 2 1 3 13 13 C 1.46898 * 111.00530 * 58.95025 * 12 2 1 14 14 C 1.46904 * 111.00005 * 294.99790 * 12 2 1 15 15 H 1.09001 * 110.34456 * 64.67878 * 14 12 2 16 16 C 1.54335 * 110.30446 * 186.80657 * 14 12 2 17 17 C 1.54339 * 102.39837 * 92.54576 * 16 14 12 18 18 C 1.51378 * 105.17412 * 26.37769 * 17 16 14 19 19 C 1.38380 * 130.32418 * 162.79034 * 18 17 16 20 20 C 1.38773 * 120.15642 * 180.02562 * 19 18 17 21 21 N 1.39671 * 120.10890 * 180.02562 * 20 19 18 22 22 C 1.38927 * 119.77501 * 359.97438 * 20 19 18 23 23 C 1.37958 * 119.86144 * 359.97438 * 22 20 19 24 24 C 1.38284 * 109.75226 * 342.79838 * 18 17 16 25 25 H 1.09000 * 109.46884 * 299.99484 * 1 2 3 26 26 H 1.09001 * 109.47555 * 59.99469 * 1 2 3 27 27 H 1.08998 * 109.47134 * 179.97438 * 1 2 3 28 28 H 0.96996 * 120.00123 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46920 * 289.52569 * 13 12 2 30 30 H 1.09008 * 109.46735 * 49.51991 * 13 12 2 31 31 H 1.08994 * 109.47295 * 169.52087 * 13 12 2 32 32 H 1.09000 * 110.81986 * 210.77543 * 16 14 12 33 33 H 1.09004 * 110.81837 * 334.31715 * 16 14 12 34 34 H 1.09000 * 110.29969 * 145.30370 * 17 16 14 35 35 H 1.08997 * 110.30176 * 267.45074 * 17 16 14 36 36 H 1.08004 * 119.91709 * 0.03212 * 19 18 17 37 37 H 0.96997 * 120.00370 * 179.97438 * 21 20 19 38 38 H 0.97003 * 120.00557 * 359.97438 * 21 20 19 39 39 H 1.08008 * 120.06585 * 180.27044 * 22 20 19 40 40 H 1.08003 * 119.84158 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 3.1463 -2.2868 -3.6040 10 1 1.1660 -1.5864 -4.8161 11 1 3.1465 -0.1871 -4.8165 12 7 2.0197 -0.6926 1.1993 13 6 1.5284 -2.0762 1.2459 14 6 1.6488 0.0390 2.4181 15 1 0.5653 0.0544 2.5359 16 6 2.3127 -0.6062 3.6529 17 6 3.6232 0.1986 3.7830 18 6 3.3268 1.5429 3.1533 19 6 3.9973 2.7488 3.2594 20 6 3.5332 3.8666 2.5806 21 7 4.2110 5.0831 2.6879 22 6 2.3927 3.7712 1.7930 23 6 1.7282 2.5666 1.6894 24 6 2.1918 1.4514 2.3687 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7080 1.1611 -3.4843 29 1 0.4578 -2.0748 1.4506 30 1 1.7144 -2.5602 0.2870 31 1 2.0484 -2.6201 2.0344 32 1 1.6901 -0.4786 4.5385 33 1 2.5217 -1.6609 3.4737 34 1 3.8880 0.3229 4.8330 35 1 4.4289 -0.3014 3.2456 36 1 4.8840 2.8200 3.8720 37 1 3.8854 5.8633 2.2125 38 1 5.0073 5.1477 3.2380 39 1 2.0298 4.6371 1.2591 40 1 0.8414 2.4930 1.0773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251437186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:40 Heat of formation + Delta-G solvation = 35.562933 kcal Electronic energy + Delta-G solvation = -20172.179492 eV Core-core repulsion = 17372.504129 eV Total energy + Delta-G solvation = -2799.675363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.88668 -37.28321 -35.14999 -33.00277 -32.21582 -29.96756 -28.58524 -27.61639 -25.91452 -25.04854 -24.11104 -22.13727 -20.60380 -20.16492 -18.60512 -16.67254 -16.12038 -16.01646 -15.64456 -15.03248 -14.49038 -14.18028 -13.50275 -13.38025 -13.07694 -12.72900 -12.55318 -12.41014 -12.27803 -11.60349 -11.43539 -11.19105 -11.08378 -10.77843 -10.69648 -10.53708 -10.48938 -10.35770 -10.04238 -9.95477 -9.92841 -9.46507 -8.77250 -8.33311 -8.13747 -7.17453 -6.86179 -5.93883 -3.95803 1.95638 2.11146 3.33597 3.41374 3.46007 4.08948 4.32475 4.48452 4.95955 5.13381 5.23833 5.38658 5.48407 5.56411 5.65723 5.87074 5.91634 6.07326 6.11989 6.21039 6.29627 6.34824 6.43747 6.49741 6.50186 6.62998 6.77736 6.83634 6.91819 6.93676 7.03054 7.23863 7.33371 7.38547 7.63262 7.78917 7.84059 7.92582 7.98691 8.26997 8.50123 8.72099 9.10214 9.68052 11.13332 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019128 B = 0.007154 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.456437 B = 3912.919079 C = 4724.345384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.205 3.795 3 H 0.053 0.947 4 C -0.496 4.496 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.523 5.523 13 C 0.032 3.968 14 C 0.125 3.875 15 H 0.037 0.963 16 C -0.117 4.117 17 C -0.071 4.071 18 C -0.042 4.042 19 C -0.195 4.195 20 C 0.208 3.792 21 N -0.885 5.885 22 C -0.199 4.199 23 C -0.040 4.040 24 C -0.123 4.123 25 H 0.007 0.993 26 H 0.086 0.914 27 H 0.027 0.973 28 H 0.258 0.742 29 H 0.012 0.988 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.394 0.606 38 H 0.392 0.608 39 H 0.115 0.885 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.288 3.801 12.175 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.099 3.901 3 H 0.071 0.929 4 C -0.534 4.534 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.212 1.212 12 N -0.247 5.247 13 C -0.116 4.116 14 C 0.016 3.984 15 H 0.055 0.945 16 C -0.155 4.155 17 C -0.108 4.108 18 C -0.043 4.043 19 C -0.218 4.218 20 C 0.105 3.895 21 N -0.425 5.425 22 C -0.222 4.222 23 C -0.059 4.059 24 C -0.126 4.126 25 H 0.026 0.974 26 H 0.105 0.895 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.222 0.778 38 H 0.220 0.780 39 H 0.133 0.867 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.697 3.828 11.997 13.124 hybrid contribution -0.443 0.059 -1.046 1.137 sum 3.254 3.887 10.951 12.067 Atomic orbital electron populations 1.22414 1.01237 0.99204 1.00321 1.19420 0.89383 0.95611 0.85676 0.92932 1.21192 1.30173 1.12242 0.89838 0.92054 1.24902 0.95377 0.95173 0.98848 1.69891 1.37291 1.23144 1.23050 0.86522 0.78490 0.79700 0.83175 1.19812 1.21270 1.21183 1.62402 1.59250 1.01400 1.01685 1.22284 0.96197 0.91319 1.01806 1.20921 0.96232 0.89712 0.91516 0.94495 1.22385 0.96088 1.00076 0.96931 1.20931 0.98700 0.92030 0.99112 1.20242 0.94221 0.93657 0.96183 1.19800 1.03061 0.91787 1.07105 1.17525 0.91677 0.86047 0.94219 1.42331 1.32874 1.09593 1.57655 1.20388 0.98019 0.98690 1.05063 1.20537 0.98967 0.90983 0.95438 1.20143 0.97937 0.94460 1.00024 0.97409 0.89490 0.95371 0.93237 0.96953 0.90481 0.93790 0.91823 0.90213 0.91881 0.89993 0.87236 0.77813 0.78026 0.86652 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.06 37.16 0.30 -3.92 16 2 C 0.21 5.19 1.93 -68.87 -0.13 5.06 16 3 H 0.05 1.46 5.31 -51.93 -0.28 1.18 16 4 C -0.50 -13.74 7.79 -34.44 -0.27 -14.01 16 5 H 0.06 1.71 6.83 -52.49 -0.36 1.35 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 8 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 N -0.52 -11.47 4.62 -228.43 -1.05 -12.52 16 13 C 0.03 0.64 8.35 60.06 0.50 1.14 16 14 C 0.12 2.38 2.15 -67.82 -0.15 2.24 16 15 H 0.04 0.74 6.73 -51.93 -0.35 0.39 16 16 C -0.12 -1.81 6.58 -25.33 -0.17 -1.97 16 17 C -0.07 -1.06 6.77 -26.85 -0.18 -1.25 16 18 C -0.04 -0.73 6.13 -104.22 -0.64 -1.37 16 19 C -0.19 -3.09 9.89 -39.33 -0.39 -3.48 16 20 C 0.21 3.23 6.75 -83.83 -0.57 2.66 16 21 N -0.88 -10.06 9.09 32.39 0.29 -9.77 16 22 C -0.20 -3.42 9.90 -39.43 -0.39 -3.81 16 23 C -0.04 -0.78 8.20 -39.56 -0.32 -1.11 16 24 C -0.12 -2.39 5.02 -104.14 -0.52 -2.91 16 25 H 0.01 0.16 6.37 -51.93 -0.33 -0.17 16 26 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 27 H 0.03 0.67 6.63 -51.93 -0.34 0.32 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.01 0.24 6.87 -51.93 -0.36 -0.12 16 30 H 0.08 1.66 6.27 -51.92 -0.33 1.33 16 31 H 0.04 0.75 6.35 -51.93 -0.33 0.42 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.19 6.02 -51.93 -0.31 0.87 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.39 3.80 8.84 -40.82 -0.36 3.44 16 38 H 0.39 3.60 8.84 -40.82 -0.36 3.24 16 39 H 0.12 1.77 8.06 -52.48 -0.42 1.34 16 40 H 0.12 2.50 7.18 -52.48 -0.38 2.12 16 LS Contribution 305.87 15.07 4.61 4.61 Total: -1.00 -30.04 305.87 -9.21 -39.25 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.65 Total: 7.97 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -3.02 Total: -21.21 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.13 Total: -47.27 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.04 -9.21 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251437186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.814 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds