Wall clock time and date at job start Mon Mar 30 2020 06:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47134 * 2 1 4 4 C 1.50700 * 109.46952 * 240.00341 * 2 1 3 5 5 H 1.07997 * 119.99980 * 239.99951 * 4 2 1 6 6 C 1.37880 * 119.99941 * 60.00006 * 4 2 1 7 7 N 1.31517 * 120.00083 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99862 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47059 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47223 * 119.99945 * 8 6 4 11 11 H 1.48501 * 109.46628 * 240.00011 * 8 6 4 12 12 N 1.46896 * 109.47282 * 120.00521 * 2 1 3 13 13 C 1.46898 * 111.00530 * 58.95025 * 12 2 1 14 14 C 1.46904 * 111.00005 * 294.99790 * 12 2 1 15 15 H 1.09001 * 110.34456 * 64.67878 * 14 12 2 16 16 C 1.54335 * 110.30446 * 186.80657 * 14 12 2 17 17 C 1.54339 * 102.39837 * 92.54576 * 16 14 12 18 18 C 1.51378 * 105.17412 * 26.37769 * 17 16 14 19 19 C 1.38380 * 130.32418 * 162.79034 * 18 17 16 20 20 C 1.38773 * 120.15642 * 180.02562 * 19 18 17 21 21 N 1.39671 * 120.10890 * 180.02562 * 20 19 18 22 22 C 1.38927 * 119.77501 * 359.97438 * 20 19 18 23 23 C 1.37958 * 119.86144 * 359.97438 * 22 20 19 24 24 C 1.38284 * 109.75226 * 342.79838 * 18 17 16 25 25 H 1.09000 * 109.46884 * 299.99484 * 1 2 3 26 26 H 1.09001 * 109.47555 * 59.99469 * 1 2 3 27 27 H 1.08998 * 109.47134 * 179.97438 * 1 2 3 28 28 H 0.96996 * 120.00123 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46920 * 289.52569 * 13 12 2 30 30 H 1.09008 * 109.46735 * 49.51991 * 13 12 2 31 31 H 1.08994 * 109.47295 * 169.52087 * 13 12 2 32 32 H 1.09000 * 110.81986 * 210.77543 * 16 14 12 33 33 H 1.09004 * 110.81837 * 334.31715 * 16 14 12 34 34 H 1.09000 * 110.29969 * 145.30370 * 17 16 14 35 35 H 1.08997 * 110.30176 * 267.45074 * 17 16 14 36 36 H 1.08004 * 119.91709 * 0.03212 * 19 18 17 37 37 H 0.96997 * 120.00370 * 179.97438 * 21 20 19 38 38 H 0.97003 * 120.00557 * 359.97438 * 21 20 19 39 39 H 1.08008 * 120.06585 * 180.27044 * 22 20 19 40 40 H 1.08003 * 119.84158 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 3.1463 -2.2868 -3.6040 10 1 1.1660 -1.5864 -4.8161 11 1 3.1465 -0.1871 -4.8165 12 7 2.0197 -0.6926 1.1993 13 6 1.5284 -2.0762 1.2459 14 6 1.6488 0.0390 2.4181 15 1 0.5653 0.0544 2.5359 16 6 2.3127 -0.6062 3.6529 17 6 3.6232 0.1986 3.7830 18 6 3.3268 1.5429 3.1533 19 6 3.9973 2.7488 3.2594 20 6 3.5332 3.8666 2.5806 21 7 4.2110 5.0831 2.6879 22 6 2.3927 3.7712 1.7930 23 6 1.7282 2.5666 1.6894 24 6 2.1918 1.4514 2.3687 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7080 1.1611 -3.4843 29 1 0.4578 -2.0748 1.4506 30 1 1.7144 -2.5602 0.2870 31 1 2.0484 -2.6201 2.0344 32 1 1.6901 -0.4786 4.5385 33 1 2.5217 -1.6609 3.4737 34 1 3.8880 0.3229 4.8330 35 1 4.4289 -0.3014 3.2456 36 1 4.8840 2.8200 3.8720 37 1 3.8854 5.8633 2.2125 38 1 5.0073 5.1477 3.2380 39 1 2.0298 4.6371 1.2591 40 1 0.8414 2.4930 1.0773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251437186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:39 Heat of formation + Delta-G solvation = 16.129423 kcal Electronic energy + Delta-G solvation = -20173.022192 eV Core-core repulsion = 17372.504129 eV Total energy + Delta-G solvation = -2800.518063 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.24766 -38.76862 -36.64639 -34.57512 -33.84902 -31.36877 -30.35010 -28.96402 -27.47871 -26.95903 -25.72475 -23.48743 -22.23531 -21.44356 -20.22436 -18.20480 -17.68301 -17.33793 -17.26260 -16.52739 -16.23447 -15.48532 -15.12060 -15.00195 -14.53972 -14.16314 -14.02071 -13.87155 -13.82335 -13.34776 -13.01819 -12.88896 -12.69689 -12.62597 -12.33953 -12.19589 -12.07067 -11.85710 -11.80523 -11.53480 -11.40187 -10.93616 -10.81670 -10.42295 -9.48890 -8.77206 -8.19981 -8.06225 -6.15926 0.62918 0.77986 1.40192 1.41990 1.53646 2.44346 2.96495 3.08128 3.22402 3.58887 3.79660 3.82905 4.24630 4.28055 4.36253 4.57385 4.61849 4.65370 4.77931 4.80120 4.84441 4.88467 4.94024 5.02357 5.04971 5.21002 5.22712 5.29808 5.34190 5.38682 5.54156 5.62388 5.66629 5.80734 5.84967 6.02824 6.08255 6.28702 6.59183 6.70004 6.86289 6.99681 7.11473 7.52139 8.99392 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019128 B = 0.007154 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.456437 B = 3912.919079 C = 4724.345384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.213 3.787 3 H 0.024 0.976 4 C -0.512 4.512 5 H 0.055 0.945 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.955 3.045 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.284 1.284 12 N -0.532 5.532 13 C 0.036 3.964 14 C 0.120 3.880 15 H 0.022 0.978 16 C -0.108 4.108 17 C -0.066 4.066 18 C -0.046 4.046 19 C -0.199 4.199 20 C 0.216 3.784 21 N -0.867 5.867 22 C -0.216 4.216 23 C -0.063 4.063 24 C -0.158 4.158 25 H 0.018 0.982 26 H 0.058 0.942 27 H 0.026 0.974 28 H 0.258 0.742 29 H 0.012 0.988 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.404 0.596 38 H 0.407 0.593 39 H 0.125 0.875 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.100 3.574 13.819 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.106 3.894 3 H 0.042 0.958 4 C -0.550 4.550 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.210 1.210 12 N -0.256 5.256 13 C -0.112 4.112 14 C 0.012 3.988 15 H 0.039 0.961 16 C -0.146 4.146 17 C -0.103 4.103 18 C -0.048 4.048 19 C -0.222 4.222 20 C 0.110 3.890 21 N -0.408 5.408 22 C -0.239 4.239 23 C -0.083 4.083 24 C -0.160 4.160 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.158 0.842 37 H 0.234 0.766 38 H 0.237 0.763 39 H 0.143 0.857 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.529 3.623 13.662 15.178 hybrid contribution -0.992 0.229 -1.512 1.823 sum 4.538 3.852 12.150 13.530 Atomic orbital electron populations 1.22186 1.01156 0.98667 0.99427 1.19110 0.89235 0.94261 0.86787 0.95795 1.21478 1.30175 1.12193 0.91187 0.92706 1.25661 0.95607 0.95879 1.01674 1.70030 1.38112 1.24264 1.23606 0.85549 0.78043 0.78675 0.79611 1.19212 1.20685 1.20989 1.62329 1.59375 1.02198 1.01683 1.22276 0.96640 0.90450 1.01860 1.21069 0.95787 0.90207 0.91720 0.96070 1.22394 0.96347 1.00171 0.95661 1.20965 0.98094 0.90353 1.00876 1.20609 0.93355 0.95248 0.95540 1.20153 1.03743 0.91183 1.07085 1.17600 0.90926 0.87482 0.92968 1.42277 1.32737 1.08505 1.57233 1.20522 0.98979 0.98282 1.06088 1.20488 0.98910 0.92637 0.96217 1.20288 0.99663 0.94354 1.01715 0.96301 0.92270 0.95445 0.93239 0.96972 0.92598 0.90369 0.89556 0.89418 0.88457 0.90380 0.84157 0.76634 0.76270 0.85728 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.91 8.06 71.98 0.58 -7.33 16 2 C 0.21 11.16 1.93 44.17 0.09 11.25 16 3 H 0.02 1.41 5.31 -2.39 -0.01 1.39 16 4 C -0.51 -29.04 7.79 25.60 0.20 -28.84 16 5 H 0.05 3.11 6.83 -2.91 -0.02 3.09 16 6 C 0.01 0.56 5.30 84.65 0.45 1.01 16 7 N -0.92 -54.29 11.32 21.45 0.24 -54.05 16 8 Si 0.95 45.03 29.54 68.60 2.03 47.05 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 12 N -0.53 -23.49 4.62 -876.61 -4.05 -27.54 16 13 C 0.04 1.40 8.35 127.69 1.07 2.47 16 14 C 0.12 4.59 2.15 44.84 0.10 4.69 16 15 H 0.02 0.87 6.73 -2.39 -0.02 0.85 16 16 C -0.11 -3.07 6.58 31.50 0.21 -2.87 16 17 C -0.07 -1.79 6.77 30.52 0.21 -1.58 16 18 C -0.05 -1.53 6.13 -19.60 -0.12 -1.65 16 19 C -0.20 -5.80 9.89 22.43 0.22 -5.58 16 20 C 0.22 6.32 6.75 38.19 0.26 6.58 16 21 N -0.87 -17.34 9.09 -51.45 -0.47 -17.81 16 22 C -0.22 -7.51 9.90 22.37 0.22 -7.29 16 23 C -0.06 -2.58 8.20 22.28 0.18 -2.40 16 24 C -0.16 -6.17 5.02 -19.55 -0.10 -6.27 16 25 H 0.02 0.87 6.37 -2.39 -0.02 0.85 16 26 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 27 H 0.03 1.34 6.63 -2.39 -0.02 1.32 16 28 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.01 0.46 6.87 -2.39 -0.02 0.44 16 30 H 0.06 2.41 6.27 -2.38 -0.01 2.39 16 31 H 0.08 2.50 6.35 -2.39 -0.02 2.48 16 32 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.09 2.34 6.02 -2.38 -0.01 2.32 16 34 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 37 H 0.40 6.80 8.84 -92.71 -0.82 5.98 16 38 H 0.41 6.02 8.84 -92.71 -0.82 5.20 16 39 H 0.12 3.90 8.06 -2.91 -0.02 3.87 16 40 H 0.09 4.16 7.18 -2.91 -0.02 4.14 16 Total: -1.00 -66.42 305.87 0.74 -65.68 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: -0.57 Total: 24.47 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 3.56 Total: -37.80 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -4.27 Total: -99.40 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -66.42 0.74 -65.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251437186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.805 kcal (2) G-P(sol) polarization free energy of solvation -66.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds