Wall clock time and date at job start Mon Mar 30 2020 06:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46877 * 2 1 4 4 C 1.50697 * 109.47120 * 240.00052 * 2 1 3 5 5 H 1.08000 * 119.99992 * 355.69591 * 4 2 1 6 6 C 1.37881 * 120.00181 * 175.70252 * 4 2 1 7 7 N 1.31504 * 120.00123 * 173.38855 * 6 4 2 8 8 Si 1.86807 * 119.99526 * 353.38482 * 6 4 2 9 9 H 1.48503 * 109.46870 * 92.38428 * 8 6 4 10 10 H 1.48500 * 109.46778 * 212.37955 * 8 6 4 11 11 H 1.48502 * 109.46997 * 332.38270 * 8 6 4 12 12 N 1.46893 * 109.46849 * 119.99781 * 2 1 3 13 13 C 1.46900 * 111.00385 * 48.53475 * 12 2 1 14 14 C 1.46899 * 111.00121 * 284.57859 * 12 2 1 15 15 H 1.08991 * 110.27105 * 318.10839 * 14 12 2 16 16 C 1.54346 * 110.30398 * 80.29199 * 14 12 2 17 17 C 1.54344 * 102.39559 * 145.26415 * 16 14 12 18 18 H 1.08991 * 110.30865 * 214.72639 * 17 16 14 19 19 N 1.46907 * 110.38219 * 92.61476 * 17 16 14 20 20 C 1.51371 * 105.16976 * 333.65738 * 17 16 14 21 21 C 1.38500 * 130.38788 * 197.17744 * 20 17 16 22 22 C 1.38100 * 120.21572 * 180.02562 * 21 20 17 23 23 C 1.38253 * 119.93538 * 359.96574 * 22 21 20 24 24 C 1.38104 * 119.93412 * 359.97438 * 23 22 21 25 25 C 1.38215 * 109.75935 * 17.18571 * 20 17 16 26 26 H 1.09001 * 109.47207 * 183.10932 * 1 2 3 27 27 H 1.09005 * 109.47009 * 303.11734 * 1 2 3 28 28 H 1.09000 * 109.46762 * 63.11014 * 1 2 3 29 29 H 0.97004 * 119.99932 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.47074 * 66.69886 * 13 12 2 31 31 H 1.08999 * 109.47742 * 186.69914 * 13 12 2 32 32 H 1.09007 * 109.46894 * 306.70174 * 13 12 2 33 33 H 1.08997 * 110.82222 * 263.49313 * 16 14 12 34 34 H 1.09000 * 110.82303 * 27.04317 * 16 14 12 35 35 H 1.00899 * 110.99815 * 182.75447 * 19 17 16 36 36 H 1.00894 * 111.00029 * 306.70888 * 19 17 16 37 37 H 1.08003 * 119.88914 * 0.02562 * 21 20 17 38 38 H 1.07999 * 120.03253 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.03313 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.89057 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 1.3330 -1.1812 -1.9055 6 6 3.3848 -0.7594 -1.4944 7 7 3.8337 -1.4870 -2.4936 8 14 4.5792 0.2077 -0.4325 9 1 5.0676 -0.6541 0.6739 10 1 5.7301 0.6507 -1.2599 11 1 3.8895 1.3953 0.1325 12 7 2.0196 -0.6924 1.1994 13 6 1.3389 -1.9819 1.3777 14 6 1.8696 0.1514 2.3925 15 1 2.1524 1.1793 2.1660 16 6 0.4163 0.0949 2.9091 17 6 0.6043 0.1892 4.4382 18 1 -0.1482 -0.4109 4.9496 19 7 0.5246 1.5885 4.8782 20 6 1.9874 -0.3663 4.7022 21 6 2.5642 -0.8169 5.8780 22 6 3.8627 -1.2872 5.8795 23 6 4.5898 -1.3093 4.7038 24 6 4.0160 -0.8615 3.5301 25 6 2.7144 -0.3880 3.5269 26 1 -0.3634 -1.0262 0.0557 27 1 -0.3633 0.5615 0.8608 28 1 -0.3633 0.4648 -0.9166 29 1 4.7852 -1.5212 -2.6795 30 1 1.6200 -2.6561 0.5685 31 1 1.6318 -2.4186 2.3325 32 1 0.2598 -1.8281 1.3642 33 1 -0.1604 0.9415 2.5368 34 1 -0.0563 -0.8481 2.6344 35 1 0.6909 1.6656 5.8704 36 1 1.1659 2.1682 4.3580 37 1 1.9966 -0.8005 6.7967 38 1 4.3096 -1.6375 6.7981 39 1 5.6052 -1.6771 4.7031 40 1 4.5845 -0.8795 2.6121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252779428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:52 Heat of formation + Delta-G solvation = 48.521697 kcal Electronic energy + Delta-G solvation = -20557.762648 eV Core-core repulsion = 17758.649219 eV Total energy + Delta-G solvation = -2799.113429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46206 -37.47146 -35.50229 -32.66826 -31.45407 -30.27634 -29.16837 -28.35523 -26.46286 -25.40024 -23.68880 -22.42120 -20.49826 -20.10547 -18.92389 -16.83990 -16.37401 -16.18654 -15.09080 -15.01208 -14.83915 -14.32935 -14.06863 -13.73880 -13.50904 -13.24511 -12.72269 -12.56237 -12.25636 -12.08461 -11.52151 -11.39770 -11.24165 -11.10478 -10.90376 -10.82278 -10.64924 -10.41672 -10.25754 -9.81774 -9.58569 -9.06899 -8.95971 -8.57094 -8.48018 -8.34947 -7.23026 -6.01552 -4.05945 1.48799 1.59445 3.47368 3.49823 3.56988 3.92059 4.49249 4.58235 4.61764 4.86061 4.88393 5.12532 5.20114 5.30140 5.39448 5.50107 5.55538 5.68411 5.90071 5.95856 6.03079 6.09936 6.14749 6.21752 6.25211 6.34967 6.42427 6.44259 6.57107 6.60443 6.72604 6.81105 6.90054 6.98641 7.08922 7.18612 7.20088 7.38333 7.69353 8.01835 8.25693 8.59512 9.00710 9.64851 11.09067 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021261 B = 0.008560 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.634877 B = 3270.403786 C = 4045.300174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.170 3.830 3 H 0.041 0.959 4 C -0.508 4.508 5 H 0.070 0.930 6 C 0.086 3.914 7 N -0.899 5.899 8 Si 0.910 3.090 9 H -0.272 1.272 10 H -0.309 1.309 11 H -0.273 1.273 12 N -0.520 5.520 13 C 0.034 3.966 14 C 0.107 3.893 15 H 0.085 0.915 16 C -0.150 4.150 17 C 0.133 3.867 18 H 0.083 0.917 19 N -0.832 5.832 20 C -0.147 4.147 21 C -0.108 4.108 22 C -0.130 4.130 23 C -0.121 4.121 24 C -0.093 4.093 25 C -0.061 4.061 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.262 0.738 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.028 0.972 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.338 0.662 36 H 0.341 0.659 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.801 2.663 16.341 16.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.065 3.935 3 H 0.059 0.941 4 C -0.546 4.546 5 H 0.088 0.912 6 C -0.118 4.118 7 N -0.537 5.537 8 Si 0.741 3.259 9 H -0.198 1.198 10 H -0.238 1.238 11 H -0.199 1.199 12 N -0.243 5.243 13 C -0.113 4.113 14 C -0.002 4.002 15 H 0.103 0.897 16 C -0.188 4.188 17 C 0.021 3.979 18 H 0.101 0.899 19 N -0.359 5.359 20 C -0.149 4.149 21 C -0.126 4.126 22 C -0.148 4.148 23 C -0.139 4.139 24 C -0.111 4.111 25 C -0.062 4.062 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.940 2.496 15.887 16.348 hybrid contribution 1.063 0.318 0.930 1.448 sum -1.877 2.814 16.817 17.153 Atomic orbital electron populations 1.22546 0.99832 1.00786 1.00105 1.19886 0.90013 0.95025 0.88577 0.94102 1.20867 0.92844 1.36003 1.04889 0.91171 1.24971 0.98507 0.94123 0.94195 1.69969 1.14374 1.39125 1.30195 0.86313 0.79192 0.80641 0.79775 1.19811 1.23787 1.19851 1.62880 1.56960 1.03387 1.01118 1.22250 0.95872 0.92524 1.00694 1.21371 0.91162 0.97610 0.90098 0.89739 1.23319 0.98738 1.03861 0.92930 1.20878 0.91464 0.88701 0.96852 0.89935 1.59134 1.59913 1.07577 1.09260 1.21508 0.98422 1.01052 0.93924 1.20497 0.95255 1.00064 0.96809 1.20949 0.94554 1.01314 0.97961 1.21087 0.99803 1.00353 0.92673 1.20981 0.94712 0.97015 0.98413 1.20661 0.93848 0.96831 0.94844 0.92922 0.94292 0.93184 0.92855 0.90639 0.93955 0.95377 0.89586 0.89185 0.85043 0.84630 0.86979 0.86463 0.86280 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 7.95 37.16 0.30 -3.08 16 2 C 0.17 3.84 1.64 -68.87 -0.11 3.73 16 3 H 0.04 0.97 6.24 -51.93 -0.32 0.64 16 4 C -0.51 -13.87 8.45 -34.44 -0.29 -14.16 16 5 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 6 C 0.09 2.45 5.46 -17.82 -0.10 2.35 16 7 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 8 Si 0.91 22.73 26.54 -169.99 -4.51 18.22 16 9 H -0.27 -6.63 5.64 56.52 0.32 -6.31 16 10 H -0.31 -7.87 7.11 56.52 0.40 -7.47 16 11 H -0.27 -6.59 6.32 56.52 0.36 -6.24 16 12 N -0.52 -10.76 2.96 -228.44 -0.68 -11.44 16 13 C 0.03 0.67 7.75 60.06 0.47 1.13 16 14 C 0.11 1.88 2.89 -67.83 -0.20 1.68 16 15 H 0.08 1.55 7.73 -51.93 -0.40 1.15 16 16 C -0.15 -2.23 4.21 -25.32 -0.11 -2.34 16 17 C 0.13 1.74 4.00 -67.83 -0.27 1.47 16 18 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 19 N -0.83 -9.67 9.29 -4.77 -0.04 -9.71 16 20 C -0.15 -2.09 5.74 -104.20 -0.60 -2.69 16 21 C -0.11 -1.38 10.04 -39.54 -0.40 -1.78 16 22 C -0.13 -1.65 10.05 -39.63 -0.40 -2.05 16 23 C -0.12 -1.74 10.05 -39.63 -0.40 -2.14 16 24 C -0.09 -1.61 10.00 -39.53 -0.40 -2.01 16 25 C -0.06 -1.02 4.81 -104.20 -0.50 -1.52 16 26 H 0.05 1.01 5.97 -51.93 -0.31 0.70 16 27 H 0.04 0.66 4.98 -51.93 -0.26 0.40 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.07 1.66 7.67 -51.93 -0.40 1.26 16 31 H 0.04 0.77 7.30 -51.93 -0.38 0.39 16 32 H 0.03 0.50 3.98 -51.92 -0.21 0.30 16 33 H 0.09 1.28 6.59 -51.93 -0.34 0.94 16 34 H 0.09 1.38 5.12 -51.93 -0.27 1.12 16 35 H 0.34 3.34 9.06 -39.29 -0.36 2.98 16 36 H 0.34 4.05 8.97 -39.29 -0.35 3.70 16 37 H 0.11 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.13 2.50 6.58 -52.49 -0.35 2.15 16 LS Contribution 301.82 15.07 4.55 4.55 Total: -1.00 -29.38 301.82 -8.65 -38.02 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.74 Total: 8.32 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -3.00 Total: -21.40 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.05 Total: -47.71 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.51 Total: 18.22 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.38 -8.65 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252779428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.546 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds