Wall clock time and date at job start Mon Mar 30 2020 06:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46877 * 2 1 4 4 C 1.50697 * 109.47120 * 240.00052 * 2 1 3 5 5 H 1.08000 * 119.99992 * 355.69591 * 4 2 1 6 6 C 1.37881 * 120.00181 * 175.70252 * 4 2 1 7 7 N 1.31504 * 120.00123 * 173.38855 * 6 4 2 8 8 Si 1.86807 * 119.99526 * 353.38482 * 6 4 2 9 9 H 1.48503 * 109.46870 * 92.38428 * 8 6 4 10 10 H 1.48500 * 109.46778 * 212.37955 * 8 6 4 11 11 H 1.48502 * 109.46997 * 332.38270 * 8 6 4 12 12 N 1.46893 * 109.46849 * 119.99781 * 2 1 3 13 13 C 1.46900 * 111.00385 * 48.53475 * 12 2 1 14 14 C 1.46899 * 111.00121 * 284.57859 * 12 2 1 15 15 H 1.08991 * 110.27105 * 318.10839 * 14 12 2 16 16 C 1.54346 * 110.30398 * 80.29199 * 14 12 2 17 17 C 1.54344 * 102.39559 * 145.26415 * 16 14 12 18 18 H 1.08991 * 110.30865 * 214.72639 * 17 16 14 19 19 N 1.46907 * 110.38219 * 92.61476 * 17 16 14 20 20 C 1.51371 * 105.16976 * 333.65738 * 17 16 14 21 21 C 1.38500 * 130.38788 * 197.17744 * 20 17 16 22 22 C 1.38100 * 120.21572 * 180.02562 * 21 20 17 23 23 C 1.38253 * 119.93538 * 359.96574 * 22 21 20 24 24 C 1.38104 * 119.93412 * 359.97438 * 23 22 21 25 25 C 1.38215 * 109.75935 * 17.18571 * 20 17 16 26 26 H 1.09001 * 109.47207 * 183.10932 * 1 2 3 27 27 H 1.09005 * 109.47009 * 303.11734 * 1 2 3 28 28 H 1.09000 * 109.46762 * 63.11014 * 1 2 3 29 29 H 0.97004 * 119.99932 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.47074 * 66.69886 * 13 12 2 31 31 H 1.08999 * 109.47742 * 186.69914 * 13 12 2 32 32 H 1.09007 * 109.46894 * 306.70174 * 13 12 2 33 33 H 1.08997 * 110.82222 * 263.49313 * 16 14 12 34 34 H 1.09000 * 110.82303 * 27.04317 * 16 14 12 35 35 H 1.00899 * 110.99815 * 182.75447 * 19 17 16 36 36 H 1.00894 * 111.00029 * 306.70888 * 19 17 16 37 37 H 1.08003 * 119.88914 * 0.02562 * 21 20 17 38 38 H 1.07999 * 120.03253 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.03313 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.89057 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 1.3330 -1.1812 -1.9055 6 6 3.3848 -0.7594 -1.4944 7 7 3.8337 -1.4870 -2.4936 8 14 4.5792 0.2077 -0.4325 9 1 5.0676 -0.6541 0.6739 10 1 5.7301 0.6507 -1.2599 11 1 3.8895 1.3953 0.1325 12 7 2.0196 -0.6924 1.1994 13 6 1.3389 -1.9819 1.3777 14 6 1.8696 0.1514 2.3925 15 1 2.1524 1.1793 2.1660 16 6 0.4163 0.0949 2.9091 17 6 0.6043 0.1892 4.4382 18 1 -0.1482 -0.4109 4.9496 19 7 0.5246 1.5885 4.8782 20 6 1.9874 -0.3663 4.7022 21 6 2.5642 -0.8169 5.8780 22 6 3.8627 -1.2872 5.8795 23 6 4.5898 -1.3093 4.7038 24 6 4.0160 -0.8615 3.5301 25 6 2.7144 -0.3880 3.5269 26 1 -0.3634 -1.0262 0.0557 27 1 -0.3633 0.5615 0.8608 28 1 -0.3633 0.4648 -0.9166 29 1 4.7852 -1.5212 -2.6795 30 1 1.6200 -2.6561 0.5685 31 1 1.6318 -2.4186 2.3325 32 1 0.2598 -1.8281 1.3642 33 1 -0.1604 0.9415 2.5368 34 1 -0.0563 -0.8481 2.6344 35 1 0.6909 1.6656 5.8704 36 1 1.1659 2.1682 4.3580 37 1 1.9966 -0.8005 6.7967 38 1 4.3096 -1.6375 6.7981 39 1 5.6052 -1.6771 4.7031 40 1 4.5845 -0.8795 2.6121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252779428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:52 Heat of formation + Delta-G solvation = 28.702951 kcal Electronic energy + Delta-G solvation = -20558.622053 eV Core-core repulsion = 17758.649219 eV Total energy + Delta-G solvation = -2799.972834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.67592 -38.90027 -36.69597 -34.57017 -32.95778 -31.32196 -30.74610 -29.56154 -27.97888 -27.18044 -25.15591 -23.55002 -21.75369 -21.44100 -20.50534 -18.88850 -17.54213 -17.34813 -16.58057 -16.25599 -16.06510 -16.02417 -15.32965 -15.15993 -14.97853 -14.67534 -14.33369 -13.82562 -13.65968 -13.52539 -13.13357 -12.82135 -12.70296 -12.57682 -12.41994 -12.25744 -12.20626 -11.86136 -11.73371 -11.63725 -11.48705 -10.92980 -10.68151 -9.98941 -9.67039 -9.40696 -8.82444 -8.24373 -6.31362 0.40062 0.48045 1.40325 1.46286 1.53816 2.46322 2.79753 3.01306 3.38755 3.56245 3.65252 3.83186 4.10399 4.13241 4.21625 4.22549 4.30157 4.46302 4.56326 4.62272 4.66041 4.72077 4.77939 4.80416 4.88784 5.01708 5.07494 5.17039 5.18698 5.24725 5.33465 5.48169 5.53603 5.61791 5.68004 5.74519 6.10032 6.13204 6.16527 6.50468 6.55418 6.64149 6.84785 7.42929 8.89487 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021261 B = 0.008560 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.634877 B = 3270.403786 C = 4045.300174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.175 3.825 3 H 0.034 0.966 4 C -0.505 4.505 5 H 0.032 0.968 6 C 0.034 3.966 7 N -0.948 5.948 8 Si 0.967 3.033 9 H -0.267 1.267 10 H -0.315 1.315 11 H -0.260 1.260 12 N -0.539 5.539 13 C 0.046 3.954 14 C 0.108 3.892 15 H 0.073 0.927 16 C -0.143 4.143 17 C 0.143 3.857 18 H 0.098 0.902 19 N -0.829 5.829 20 C -0.142 4.142 21 C -0.102 4.102 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.086 4.086 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.262 0.738 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.351 0.649 36 H 0.340 0.660 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.134 0.866 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.726 3.453 20.443 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.069 3.931 3 H 0.051 0.949 4 C -0.543 4.543 5 H 0.050 0.950 6 C -0.165 4.165 7 N -0.588 5.588 8 Si 0.796 3.204 9 H -0.193 1.193 10 H -0.244 1.244 11 H -0.185 1.185 12 N -0.262 5.262 13 C -0.102 4.102 14 C -0.001 4.001 15 H 0.091 0.909 16 C -0.181 4.181 17 C 0.031 3.969 18 H 0.116 0.884 19 N -0.357 5.357 20 C -0.144 4.144 21 C -0.120 4.120 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.140 4.140 25 C -0.087 4.087 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.152 0.848 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.884 3.298 20.019 20.657 hybrid contribution 1.313 0.045 -0.290 1.345 sum -2.571 3.343 19.729 20.175 Atomic orbital electron populations 1.22431 0.97351 1.01288 1.01285 1.19665 0.92043 0.93770 0.87653 0.94852 1.21147 0.92101 1.34915 1.06177 0.94974 1.25702 1.00346 0.95122 0.95320 1.70096 1.14654 1.41547 1.32518 0.85402 0.77016 0.79856 0.78119 1.19286 1.24368 1.18459 1.62469 1.57666 1.04133 1.01914 1.22113 0.96872 0.91408 0.99800 1.21366 0.93458 0.96261 0.89021 0.90922 1.23204 0.96530 1.03787 0.94621 1.20769 0.91146 0.89657 0.95334 0.88377 1.59114 1.59821 1.06508 1.10242 1.21674 0.98565 1.00674 0.93531 1.20896 0.95405 0.98335 0.97392 1.21348 0.94397 0.99742 0.98363 1.21300 1.00754 0.99958 0.92431 1.20896 0.95234 0.99566 0.98353 1.20599 0.94020 0.98553 0.95513 0.92943 0.91231 0.93670 0.92952 0.94175 0.92737 0.93467 0.89271 0.89414 0.83559 0.84757 0.83667 0.83068 0.84847 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.26 7.95 71.98 0.57 -5.69 16 2 C 0.17 7.94 1.64 44.17 0.07 8.01 16 3 H 0.03 1.58 6.24 -2.39 -0.01 1.56 16 4 C -0.51 -28.66 8.45 25.60 0.22 -28.44 16 5 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 6 C 0.03 2.00 5.46 84.66 0.46 2.46 16 7 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 8 Si 0.97 48.55 26.54 68.60 1.82 50.37 16 9 H -0.27 -13.11 5.64 99.48 0.56 -12.55 16 10 H -0.31 -15.93 7.11 99.48 0.71 -15.23 16 11 H -0.26 -12.32 6.32 99.48 0.63 -11.69 16 12 N -0.54 -22.22 2.96 -876.65 -2.60 -24.81 16 13 C 0.05 1.77 7.75 127.69 0.99 2.76 16 14 C 0.11 3.64 2.89 44.84 0.13 3.77 16 15 H 0.07 2.60 7.73 -2.39 -0.02 2.58 16 16 C -0.14 -3.85 4.21 31.51 0.13 -3.72 16 17 C 0.14 3.19 4.00 44.84 0.18 3.37 16 18 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 19 N -0.83 -16.04 9.29 -168.99 -1.57 -17.61 16 20 C -0.14 -3.55 5.74 -19.59 -0.11 -3.66 16 21 C -0.10 -2.12 10.04 22.30 0.22 -1.89 16 22 C -0.12 -2.55 10.05 22.24 0.22 -2.32 16 23 C -0.13 -3.35 10.05 22.24 0.22 -3.13 16 24 C -0.12 -4.13 10.00 22.30 0.22 -3.91 16 25 C -0.09 -2.73 4.81 -19.59 -0.09 -2.83 16 26 H 0.05 1.97 5.97 -2.39 -0.01 1.96 16 27 H 0.07 2.20 4.98 -2.38 -0.01 2.19 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 30 H 0.04 1.81 7.67 -2.38 -0.02 1.79 16 31 H 0.05 1.95 7.30 -2.39 -0.02 1.94 16 32 H 0.05 1.63 3.98 -2.38 -0.01 1.62 16 33 H 0.09 2.36 6.59 -2.39 -0.02 2.34 16 34 H 0.09 2.43 5.12 -2.39 -0.01 2.42 16 35 H 0.35 5.37 9.06 -89.69 -0.81 4.55 16 36 H 0.34 6.98 8.97 -89.70 -0.80 6.18 16 37 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 38 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.13 3.03 8.06 -2.91 -0.02 3.00 16 40 H 0.09 3.76 6.58 -2.91 -0.02 3.74 16 Total: -1.00 -66.53 301.82 0.62 -65.91 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -0.78 Total: 21.30 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 3.44 Total: -35.21 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -3.87 Total: -102.37 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 1.82 Total: 50.37 kcal Total: -66.53 0.62 -65.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252779428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.616 kcal (2) G-P(sol) polarization free energy of solvation -66.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds