Wall clock time and date at job start Mon Mar 30 2020 07:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36831 * 120.00369 * 2 1 4 4 H 1.07999 * 120.00214 * 203.08388 * 3 2 1 5 5 C 1.38618 * 119.99927 * 23.07690 * 3 2 1 6 6 N 1.31696 * 119.99780 * 14.53503 * 5 3 2 7 7 Si 1.86799 * 120.00034 * 194.53410 * 5 3 2 8 8 H 1.48496 * 109.47101 * 89.99915 * 7 5 3 9 9 H 1.48496 * 109.46904 * 210.00102 * 7 5 3 10 10 H 1.48498 * 109.47034 * 330.00198 * 7 5 3 11 11 C 1.38639 * 119.99620 * 179.97438 * 2 1 3 12 12 C 1.34594 * 125.25012 * 359.97438 * 11 2 1 13 13 C 1.38227 * 114.70156 * 179.97438 * 12 11 2 14 14 Br 1.89097 * 122.49734 * 179.97438 * 13 12 11 15 15 C 1.33597 * 115.00520 * 0.02562 * 13 12 11 16 16 S 1.75862 * 109.75693 * 359.75386 * 15 13 12 17 17 H 1.09007 * 109.47330 * 268.81524 * 1 2 3 18 18 H 1.08995 * 109.47608 * 148.81672 * 1 2 3 19 19 H 1.09004 * 109.47188 * 28.81428 * 1 2 3 20 20 H 0.97003 * 120.00134 * 180.02562 * 6 5 3 21 21 H 1.07994 * 122.65243 * 0.02562 * 12 11 2 22 22 H 1.07999 * 125.12232 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1492 1.1849 0.0000 4 1 3.1643 1.2224 -0.3667 5 6 1.5393 2.3374 0.4705 6 7 0.4289 2.2547 1.1738 7 14 2.2926 4.0078 0.1072 8 1 1.7400 4.5333 -1.1670 9 1 1.9700 4.9469 1.2113 10 1 3.7664 3.8708 -0.0116 11 6 2.1581 -1.2007 0.0005 12 6 1.5945 -2.4230 0.0016 13 6 2.4930 -3.4733 0.0014 14 35 1.9415 -5.2821 0.0034 15 6 3.7802 -3.1154 0.0007 16 16 3.9095 -1.3616 -0.0068 17 1 -0.3634 -0.0212 1.0275 18 1 -0.3634 -0.8791 -0.5321 19 1 -0.3634 0.9005 -0.4953 20 1 0.0019 3.0611 1.5028 21 1 0.5248 -2.5714 0.0017 22 1 4.6154 -3.8000 0.0001 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258672834.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:52 Heat of formation + Delta-G solvation = 40.446117 kcal Electronic energy + Delta-G solvation = -10342.237270 eV Core-core repulsion = 8263.448047 eV Total energy + Delta-G solvation = -2078.789222 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -37.63325 -35.49509 -32.17558 -29.95336 -27.25849 -26.95774 -24.21455 -21.31543 -18.35962 -17.73820 -16.51420 -15.04408 -14.70125 -13.75830 -13.65863 -13.16479 -12.19397 -12.00000 -11.67643 -11.43363 -11.04346 -10.96288 -10.87130 -10.52359 -10.25041 -9.91093 -9.50056 -9.40836 -8.70752 -7.46481 -6.86406 -6.54932 -4.03085 2.11183 2.13240 2.56167 3.00395 3.05109 3.08598 3.42470 3.65569 3.86081 4.73001 4.83925 6.07165 6.24627 6.46692 6.66833 6.83931 6.99876 7.08691 7.18201 7.26959 7.64570 8.27348 8.88941 9.20146 10.30681 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.056351 B = 0.006091 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.766252 B = 4595.962211 C = 5028.914220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.398 5.398 3 C -0.318 4.318 4 H 0.101 0.899 5 C 0.036 3.964 6 N -0.858 5.858 7 Si 0.933 3.067 8 H -0.273 1.273 9 H -0.279 1.279 10 H -0.265 1.265 11 C 0.147 3.853 12 C -0.344 4.344 13 C 0.002 3.998 14 Br -0.081 7.081 15 C -0.320 4.320 16 S 0.080 5.920 17 H 0.060 0.940 18 H 0.036 0.964 19 H 0.073 0.927 20 H 0.276 0.724 21 H 0.123 0.877 22 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 -7.307 -2.037 7.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.083 5.083 3 C -0.448 4.448 4 H 0.118 0.882 5 C -0.172 4.172 6 N -0.492 5.492 7 Si 0.758 3.242 8 H -0.198 1.198 9 H -0.204 1.204 10 H -0.189 1.189 11 C -0.091 4.091 12 C -0.378 4.378 13 C -0.089 4.089 14 Br 0.002 6.998 15 C -0.459 4.459 16 S 0.329 5.671 17 H 0.078 0.922 18 H 0.055 0.945 19 H 0.092 0.908 20 H 0.086 0.914 21 H 0.141 0.859 22 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.343 -6.578 -1.928 7.245 hybrid contribution -0.870 0.214 -0.037 0.896 sum 1.474 -6.365 -1.965 6.822 Atomic orbital electron populations 1.21559 0.79099 0.99856 1.01686 1.42109 1.04685 1.00855 1.60611 1.19722 1.00111 0.84185 1.40772 0.88155 1.25422 0.96657 1.00654 0.94460 1.70137 1.18434 1.30419 1.30215 0.85804 0.79745 0.80237 0.78403 1.19832 1.20414 1.18900 1.21918 0.94507 0.89533 1.03181 1.18679 0.99141 0.89039 1.30907 1.19898 0.94188 0.88633 1.06196 1.96458 1.91793 1.13493 1.98023 1.24424 0.98039 0.97266 1.26125 1.83802 1.02209 1.01061 1.79980 0.92189 0.94529 0.90849 0.91415 0.85904 0.83485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.76 8.60 59.84 0.51 3.28 14 2 N -0.40 -9.72 3.11 -121.80 -0.38 -10.09 14 3 C -0.32 -7.94 9.25 -15.18 -0.14 -8.08 14 4 H 0.10 2.45 7.11 -52.49 -0.37 2.08 14 5 C 0.04 0.86 5.01 -17.47 -0.09 0.78 14 6 N -0.86 -21.41 10.84 55.48 0.60 -20.80 14 7 Si 0.93 18.77 29.58 -169.99 -5.03 13.74 14 8 H -0.27 -5.42 7.11 56.52 0.40 -5.02 14 9 H -0.28 -5.58 7.11 56.52 0.40 -5.18 14 10 H -0.26 -5.26 7.11 56.52 0.40 -4.86 14 11 C 0.15 3.41 6.96 -15.76 -0.11 3.30 14 12 C -0.34 -7.60 9.28 -40.87 -0.38 -7.98 14 13 C 0.00 0.04 6.16 -41.21 -0.25 -0.21 14 14 Br -0.08 -1.38 33.86 -68.01 -2.30 -3.68 14 15 C -0.32 -6.31 11.04 29.11 0.32 -5.99 14 16 S 0.08 1.66 22.05 -107.50 -2.37 -0.71 14 17 H 0.06 1.40 7.69 -51.92 -0.40 1.00 14 18 H 0.04 0.74 6.71 -51.93 -0.35 0.39 14 19 H 0.07 1.67 6.96 -51.93 -0.36 1.31 14 20 H 0.28 6.45 8.32 -40.82 -0.34 6.11 14 21 H 0.12 2.65 6.86 -52.49 -0.36 2.29 14 22 H 0.15 2.58 8.06 -52.49 -0.42 2.15 14 LS Contribution 228.75 15.07 3.45 3.45 Total: -1.00 -25.16 228.75 -7.57 -32.72 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -1.40 Total: 0.29 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -0.13 Total: -14.91 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.22 Total: -30.90 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.37 Total: -0.71 kcal Atomic # 35 Polarization: -1.38 SS G_CDS: -2.30 Total: -3.68 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -25.16 -7.57 -32.72 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258672834.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.169 kcal (2) G-P(sol) polarization free energy of solvation -25.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds