Wall clock time and date at job start Mon Mar 30 2020 07:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36842 * 119.99990 * 2 1 4 4 H 1.08001 * 119.99526 * 203.09006 * 3 2 1 5 5 C 1.38585 * 120.00224 * 23.08948 * 3 2 1 6 6 N 1.31723 * 119.99696 * 14.54201 * 5 3 2 7 7 Si 1.86795 * 120.00169 * 194.53622 * 5 3 2 8 8 H 1.48502 * 109.47099 * 60.00203 * 7 5 3 9 9 H 1.48498 * 109.47120 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47407 * 300.00332 * 7 5 3 11 11 C 1.38642 * 120.00036 * 179.97438 * 2 1 3 12 12 C 1.34578 * 125.24417 * 0.02562 * 11 2 1 13 13 C 1.38199 * 114.71470 * 179.97438 * 12 11 2 14 14 C 1.33658 * 114.99663 * 0.02562 * 13 12 11 15 15 Br 1.89097 * 125.12664 * 179.97438 * 14 13 12 16 16 S 1.75857 * 109.74555 * 0.02562 * 14 13 12 17 17 H 1.08998 * 109.47347 * 268.79380 * 1 2 3 18 18 H 1.09006 * 109.46989 * 28.79225 * 1 2 3 19 19 H 1.09003 * 109.47047 * 148.79038 * 1 2 3 20 20 H 0.97003 * 119.99553 * 179.97438 * 6 5 3 21 21 H 1.07999 * 122.64072 * 359.97438 * 12 11 2 22 22 H 1.08005 * 122.50354 * 179.72878 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.1643 1.2225 -0.3668 5 6 1.5395 2.3372 0.4707 6 7 0.4291 2.2544 1.1744 7 14 2.2926 4.0076 0.1073 8 1 2.3590 4.2116 -1.3621 9 1 1.4554 5.0714 0.7179 10 1 3.6623 4.0678 0.6778 11 6 2.1582 -1.2007 0.0005 12 6 1.5946 -2.4228 0.0006 13 6 2.4927 -3.4732 0.0006 14 6 3.7805 -3.1152 0.0011 15 35 5.2429 -4.3140 0.0020 16 16 3.9096 -1.3614 0.0023 17 1 -0.3634 -0.0216 1.0274 18 1 -0.3633 0.9007 -0.4950 19 1 -0.3633 -0.8790 -0.5325 20 1 0.0026 3.0608 1.5041 21 1 0.5248 -2.5709 0.0006 22 1 2.1775 -4.5062 0.0050 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258702048.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:55 Heat of formation + Delta-G solvation = 38.400992 kcal Electronic energy + Delta-G solvation = -10311.323441 eV Core-core repulsion = 8232.445536 eV Total energy + Delta-G solvation = -2078.877906 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -37.62730 -35.39353 -32.19976 -30.36775 -27.00879 -26.79101 -23.87921 -21.61770 -18.26425 -17.98125 -16.38337 -15.00484 -14.69339 -13.75025 -13.67110 -13.20619 -12.12807 -11.90646 -11.73370 -11.41793 -11.08817 -11.03323 -10.88915 -10.56578 -10.30272 -9.83789 -9.43245 -9.37475 -8.63661 -7.45825 -6.87335 -6.54984 -4.06939 2.10228 2.16866 2.93276 3.00851 3.03136 3.05176 3.09149 3.79494 3.84119 4.69571 4.77006 6.11057 6.21201 6.51251 6.64835 6.92469 6.95436 7.05329 7.26098 7.37272 7.66294 8.23261 8.84066 9.14185 10.25375 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.049181 B = 0.006207 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.185292 B = 4510.130883 C = 5008.451805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.391 5.391 3 C -0.320 4.320 4 H 0.102 0.898 5 C 0.037 3.963 6 N -0.856 5.856 7 Si 0.933 3.067 8 H -0.268 1.268 9 H -0.279 1.279 10 H -0.267 1.267 11 C 0.147 3.853 12 C -0.356 4.356 13 C -0.005 4.005 14 C -0.328 4.328 15 Br -0.052 7.052 16 S 0.094 5.906 17 H 0.061 0.939 18 H 0.074 0.926 19 H 0.038 0.962 20 H 0.277 0.723 21 H 0.120 0.880 22 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.922 -6.286 -1.997 7.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.075 5.075 3 C -0.449 4.449 4 H 0.119 0.881 5 C -0.171 4.171 6 N -0.490 5.490 7 Si 0.758 3.242 8 H -0.193 1.193 9 H -0.204 1.204 10 H -0.191 1.191 11 C -0.093 4.093 12 C -0.388 4.388 13 C -0.038 4.038 14 C -0.524 4.524 15 Br 0.030 6.970 16 S 0.342 5.658 17 H 0.080 0.920 18 H 0.092 0.908 19 H 0.056 0.944 20 H 0.087 0.913 21 H 0.138 0.862 22 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.252 -5.341 -1.877 7.722 hybrid contribution -1.350 0.070 -0.042 1.353 sum 3.902 -5.272 -1.919 6.833 Atomic orbital electron populations 1.21593 0.79043 0.99978 1.01792 1.42215 1.04806 1.01103 1.59378 1.19722 1.00158 0.84216 1.40825 0.88067 1.25439 0.96574 1.00753 0.94328 1.70136 1.18325 1.30686 1.29822 0.85861 0.79325 0.79725 0.79284 1.19299 1.20351 1.19137 1.22213 0.94764 0.89770 1.02513 1.18942 0.99298 0.89811 1.30782 1.19364 0.90373 0.98689 0.95324 1.24450 0.94340 0.95586 1.38004 1.96337 1.42371 1.59452 1.98823 1.83769 1.01619 0.99217 1.81169 0.92048 0.90780 0.94374 0.91256 0.86189 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.66 8.60 59.84 0.51 3.17 14 2 N -0.39 -9.49 3.11 -121.81 -0.38 -9.87 14 3 C -0.32 -7.96 9.25 -15.19 -0.14 -8.10 14 4 H 0.10 2.48 7.11 -52.49 -0.37 2.10 14 5 C 0.04 0.89 5.01 -17.47 -0.09 0.80 14 6 N -0.86 -21.12 10.84 55.48 0.60 -20.52 14 7 Si 0.93 18.67 29.58 -169.99 -5.03 13.64 14 8 H -0.27 -5.29 7.11 56.52 0.40 -4.89 14 9 H -0.28 -5.49 7.11 56.52 0.40 -5.09 14 10 H -0.27 -5.32 7.11 56.52 0.40 -4.92 14 11 C 0.15 3.42 6.96 -15.76 -0.11 3.31 14 12 C -0.36 -7.68 9.42 -40.89 -0.39 -8.07 14 13 C -0.01 -0.11 10.10 -41.20 -0.42 -0.52 14 14 C -0.33 -6.67 6.96 29.13 0.20 -6.46 14 15 Br -0.05 -0.90 34.07 -68.01 -2.32 -3.22 14 16 S 0.09 2.04 22.05 -107.50 -2.37 -0.33 14 17 H 0.06 1.40 7.69 -51.93 -0.40 1.00 14 18 H 0.07 1.66 6.96 -51.93 -0.36 1.30 14 19 H 0.04 0.74 6.71 -51.93 -0.35 0.39 14 20 H 0.28 6.43 8.32 -40.82 -0.34 6.09 14 21 H 0.12 2.44 6.86 -52.49 -0.36 2.08 14 22 H 0.12 2.08 8.06 -52.48 -0.42 1.66 14 LS Contribution 228.96 15.07 3.45 3.45 Total: -1.00 -25.12 228.96 -7.86 -32.98 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -1.40 Total: -0.27 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -0.42 Total: -15.86 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 0.22 Total: -30.38 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.37 Total: -0.33 kcal Atomic # 35 Polarization: -0.90 SS G_CDS: -2.32 Total: -3.22 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -25.12 -7.86 -32.98 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258702048.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.379 kcal (2) G-P(sol) polarization free energy of solvation -25.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds