Wall clock time and date at job start Mon Mar 30 2020 07:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36842 * 119.99990 * 2 1 4 4 H 1.08001 * 119.99526 * 203.09006 * 3 2 1 5 5 C 1.38585 * 120.00224 * 23.08948 * 3 2 1 6 6 N 1.31723 * 119.99696 * 14.54201 * 5 3 2 7 7 Si 1.86795 * 120.00169 * 194.53622 * 5 3 2 8 8 H 1.48502 * 109.47099 * 60.00203 * 7 5 3 9 9 H 1.48498 * 109.47120 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47407 * 300.00332 * 7 5 3 11 11 C 1.38642 * 120.00036 * 179.97438 * 2 1 3 12 12 C 1.34578 * 125.24417 * 0.02562 * 11 2 1 13 13 C 1.38199 * 114.71470 * 179.97438 * 12 11 2 14 14 C 1.33658 * 114.99663 * 0.02562 * 13 12 11 15 15 Br 1.89097 * 125.12664 * 179.97438 * 14 13 12 16 16 S 1.75857 * 109.74555 * 0.02562 * 14 13 12 17 17 H 1.08998 * 109.47347 * 268.79380 * 1 2 3 18 18 H 1.09006 * 109.46989 * 28.79225 * 1 2 3 19 19 H 1.09003 * 109.47047 * 148.79038 * 1 2 3 20 20 H 0.97003 * 119.99553 * 179.97438 * 6 5 3 21 21 H 1.07999 * 122.64072 * 359.97438 * 12 11 2 22 22 H 1.08005 * 122.50354 * 179.72878 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.1643 1.2225 -0.3668 5 6 1.5395 2.3372 0.4707 6 7 0.4291 2.2544 1.1744 7 14 2.2926 4.0076 0.1073 8 1 2.3590 4.2116 -1.3621 9 1 1.4554 5.0714 0.7179 10 1 3.6623 4.0678 0.6778 11 6 2.1582 -1.2007 0.0005 12 6 1.5946 -2.4228 0.0006 13 6 2.4927 -3.4732 0.0006 14 6 3.7805 -3.1152 0.0011 15 35 5.2429 -4.3140 0.0020 16 16 3.9096 -1.3614 0.0023 17 1 -0.3634 -0.0216 1.0274 18 1 -0.3633 0.9007 -0.4950 19 1 -0.3633 -0.8790 -0.5325 20 1 0.0026 3.0608 1.5041 21 1 0.5248 -2.5709 0.0006 22 1 2.1775 -4.5062 0.0050 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258702048.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:55 Heat of formation + Delta-G solvation = 26.041754 kcal Electronic energy + Delta-G solvation = -10311.859378 eV Core-core repulsion = 8232.445536 eV Total energy + Delta-G solvation = -2079.413842 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.34888 -37.09108 -33.95771 -31.95401 -28.76243 -28.49425 -25.61715 -23.32226 -20.02438 -19.66703 -18.14522 -16.69527 -16.40585 -15.47659 -15.37817 -14.85243 -13.80670 -13.55894 -13.42497 -13.08965 -12.75855 -12.69649 -12.57733 -12.14571 -11.92919 -11.50674 -11.10174 -10.92715 -10.33220 -9.17467 -8.63218 -8.29665 -5.90924 0.41837 0.49823 1.24976 1.38277 1.42066 1.44734 1.51143 2.12533 2.18629 2.90396 3.04457 4.46096 4.58938 4.80553 4.94295 5.18142 5.21657 5.27219 5.56721 5.68282 5.92808 6.46182 7.08304 7.36901 8.49813 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.049181 B = 0.006207 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.185292 B = 4510.130883 C = 5008.451805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.134 3.866 2 N -0.418 5.418 3 C -0.345 4.345 4 H 0.096 0.904 5 C -0.002 4.002 6 N -0.886 5.886 7 Si 0.994 3.006 8 H -0.264 1.264 9 H -0.274 1.274 10 H -0.266 1.266 11 C 0.127 3.873 12 C -0.355 4.355 13 C -0.009 4.009 14 C -0.323 4.323 15 Br -0.017 7.017 16 S 0.083 5.917 17 H 0.044 0.956 18 H 0.062 0.938 19 H 0.059 0.941 20 H 0.279 0.721 21 H 0.131 0.869 22 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.681 -7.296 -2.313 8.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.104 5.104 3 C -0.474 4.474 4 H 0.114 0.886 5 C -0.206 4.206 6 N -0.520 5.520 7 Si 0.816 3.184 8 H -0.188 1.188 9 H -0.198 1.198 10 H -0.191 1.191 11 C -0.110 4.110 12 C -0.388 4.388 13 C -0.041 4.041 14 C -0.520 4.520 15 Br 0.066 6.934 16 S 0.332 5.668 17 H 0.063 0.937 18 H 0.081 0.919 19 H 0.077 0.923 20 H 0.088 0.912 21 H 0.149 0.851 22 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.030 -6.372 -2.198 9.044 hybrid contribution -1.460 0.108 0.056 1.465 sum 4.570 -6.264 -2.142 8.044 Atomic orbital electron populations 1.21424 0.78493 1.00318 1.00830 1.42308 1.05275 1.01176 1.61683 1.19877 1.00442 0.85172 1.41915 0.88648 1.26212 0.96996 1.03508 0.93900 1.70217 1.19470 1.31400 1.30916 0.84960 0.78433 0.75857 0.79154 1.18829 1.19818 1.19063 1.22605 0.95551 0.90248 1.02636 1.19264 1.00305 0.89648 1.29537 1.19658 0.89956 0.99833 0.94626 1.24845 0.95900 0.95435 1.35801 1.96379 1.40568 1.57753 1.98710 1.83812 1.01308 1.00803 1.80889 0.93720 0.91936 0.92278 0.91151 0.85094 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.97 8.60 127.77 1.10 7.07 14 2 N -0.42 -20.45 3.11 -539.30 -1.68 -22.13 14 3 C -0.35 -17.44 9.25 83.99 0.78 -16.66 14 4 H 0.10 4.76 7.11 -2.91 -0.02 4.74 14 5 C 0.00 -0.07 5.01 84.79 0.43 0.35 14 6 N -0.89 -44.44 10.84 21.61 0.23 -44.21 14 7 Si 0.99 38.39 29.58 68.60 2.03 40.42 14 8 H -0.26 -9.89 7.11 99.48 0.71 -9.18 14 9 H -0.27 -10.21 7.11 99.48 0.71 -9.51 14 10 H -0.27 -10.13 7.11 99.48 0.71 -9.42 14 11 C 0.13 5.82 6.96 82.78 0.58 6.40 14 12 C -0.35 -14.69 9.42 21.42 0.20 -14.48 14 13 C -0.01 -0.33 10.10 21.22 0.21 -0.11 14 14 C -0.32 -12.36 6.96 66.78 0.47 -11.89 14 15 Br -0.02 -0.52 34.07 -20.37 -0.69 -1.22 14 16 S 0.08 3.52 22.05 -56.49 -1.25 2.27 14 17 H 0.04 2.08 7.69 -2.39 -0.02 2.07 14 18 H 0.06 2.86 6.96 -2.38 -0.02 2.85 14 19 H 0.06 2.28 6.71 -2.39 -0.02 2.27 14 20 H 0.28 13.12 8.32 -92.71 -0.77 12.35 14 21 H 0.13 5.07 6.86 -2.91 -0.02 5.05 14 22 H 0.15 4.63 8.06 -2.91 -0.02 4.61 14 Total: -1.00 -52.00 228.96 3.64 -48.36 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 1.23 Total: 5.83 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 3.76 Total: -29.33 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -1.44 Total: -66.33 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.25 Total: 2.27 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -0.69 Total: -1.22 kcal Total: -52.00 3.64 -48.36 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258702048.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.400 kcal (2) G-P(sol) polarization free energy of solvation -51.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds