Wall clock time and date at job start Mon Mar 30 2020 07:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48501 * 109.46995 * 239.99919 * 3 2 1 5 5 H 1.48499 * 109.47047 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46876 * 119.99967 * 3 2 1 7 7 C 1.37875 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00450 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99963 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47324 * 179.97438 * 9 7 2 11 11 C 1.39672 * 120.00058 * 180.02562 * 10 9 7 12 12 C 1.34051 * 125.22804 * 180.02562 * 11 10 9 13 13 C 1.38647 * 114.72602 * 180.02562 * 12 11 10 14 14 C 1.33287 * 114.95483 * 0.02562 * 13 12 11 15 15 Br 1.89097 * 125.13485 * 179.97438 * 14 13 12 16 16 S 1.75859 * 109.73916 * 359.97438 * 14 13 12 17 17 H 0.96998 * 120.00088 * 0.02562 * 1 2 3 18 18 H 1.09003 * 109.46825 * 59.99930 * 9 7 2 19 19 H 1.08996 * 109.47167 * 300.00560 * 9 7 2 20 20 H 0.97007 * 119.99927 * 0.02562 * 10 9 7 21 21 H 1.08001 * 122.63883 * 0.04479 * 12 11 10 22 22 H 1.08003 * 122.52574 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2030 -3.6126 0.0015 11 6 1.7375 -4.9295 0.0019 12 6 2.5121 -6.0235 0.0022 13 6 1.8194 -7.2246 0.0020 14 6 0.4917 -7.1080 0.0010 15 35 -0.7277 -8.5533 -0.0002 16 16 0.0448 -5.4071 0.0009 17 1 -0.4850 0.8400 -0.0004 18 1 0.6240 -2.5575 -0.8880 19 1 0.6247 -2.5563 0.8919 20 1 3.1568 -3.4354 0.0010 21 1 3.5909 -5.9734 0.0029 22 1 2.3182 -8.1825 0.0026 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258915947.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:59 Heat of formation + Delta-G solvation = 8.184730 kcal Electronic energy + Delta-G solvation = -9890.537190 eV Core-core repulsion = 7810.349009 eV Total energy + Delta-G solvation = -2080.188181 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.05000 -36.69550 -34.59370 -32.32196 -29.84181 -27.32586 -24.64578 -24.03367 -20.84228 -18.68930 -18.32977 -16.95124 -16.57929 -15.42879 -15.37848 -15.03442 -14.15120 -14.01908 -13.65025 -13.18193 -12.79802 -12.74829 -12.23636 -12.12886 -11.82794 -11.54442 -11.12913 -10.87720 -10.47905 -9.48147 -8.34207 -8.24715 -6.49320 0.13514 0.17704 0.91468 1.01493 1.41888 1.44303 1.52756 1.87560 2.30877 2.69493 3.01609 4.38643 4.62586 4.85789 5.00485 5.15311 5.16251 5.44000 5.52746 5.78510 6.16009 6.57017 6.87816 7.23276 8.77191 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.072513 B = 0.004601 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.047444 B = 6084.432979 C = 6455.336439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.264 3.736 10 N -0.697 5.697 11 C 0.139 3.861 12 C -0.282 4.282 13 C -0.024 4.024 14 C -0.276 4.276 15 Br 0.003 6.997 16 S 0.102 5.898 17 H 0.271 0.729 18 H -0.002 1.002 19 H -0.002 1.002 20 H 0.409 0.591 21 H 0.158 0.842 22 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.546 -15.555 0.001 15.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.599 4.599 8 H 0.094 0.906 9 C 0.141 3.859 10 N -0.327 5.327 11 C -0.088 4.088 12 C -0.316 4.316 13 C -0.057 4.057 14 C -0.473 4.473 15 Br 0.086 6.914 16 S 0.354 5.646 17 H 0.080 0.920 18 H 0.016 0.984 19 H 0.016 0.984 20 H 0.247 0.753 21 H 0.176 0.824 22 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.537 -15.019 0.000 15.028 hybrid contribution 1.898 0.635 0.002 2.001 sum 1.361 -14.384 0.002 14.448 Atomic orbital electron populations 1.70061 1.07865 1.28782 1.49529 1.25916 0.95805 1.03462 0.93742 0.85283 0.78056 0.77092 0.79290 1.19001 1.20734 1.19014 1.21474 0.94140 0.90792 1.53459 0.90602 1.18797 0.88472 0.84041 0.94546 1.44763 1.09691 1.00395 1.77809 1.22729 0.96900 0.89674 0.99458 1.19785 1.01460 0.89348 1.20998 1.20000 0.90784 0.99803 0.95141 1.25367 0.97880 0.95183 1.28835 1.96542 1.58160 1.38329 1.98412 1.84764 1.03814 0.98361 1.77665 0.92045 0.98412 0.98407 0.75321 0.82404 0.81403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.03 13.29 21.45 0.28 -52.75 14 2 C 0.01 0.61 5.46 84.65 0.46 1.07 14 3 Si 0.98 41.42 29.54 68.60 2.03 43.45 14 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 14 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 14 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 14 7 C -0.56 -29.67 9.28 25.60 0.24 -29.43 14 8 H 0.08 3.74 7.60 -2.91 -0.02 3.72 14 9 C 0.26 13.41 5.39 85.64 0.46 13.88 14 10 N -0.70 -28.75 5.75 -346.28 -1.99 -30.74 14 11 C 0.14 5.16 7.24 82.49 0.60 5.75 14 12 C -0.28 -8.61 10.21 21.41 0.22 -8.40 14 13 C -0.02 -0.67 10.10 21.25 0.21 -0.46 14 14 C -0.28 -8.41 6.95 66.70 0.46 -7.95 14 15 Br 0.00 0.07 34.07 -20.37 -0.69 -0.63 14 16 S 0.10 3.73 22.57 -56.49 -1.27 2.46 14 17 H 0.27 14.58 8.31 -92.71 -0.77 13.81 14 18 H 0.00 -0.11 8.14 -2.39 -0.02 -0.12 14 19 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 14 20 H 0.41 15.15 8.44 -92.70 -0.78 14.37 14 21 H 0.16 4.06 8.06 -2.91 -0.02 4.04 14 22 H 0.17 3.53 8.06 -2.91 -0.02 3.51 14 Total: -1.00 -57.18 237.89 1.47 -55.71 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.46 Total: 8.03 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 2.66 Total: -25.54 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -1.71 Total: -83.48 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.27 Total: 2.46 kcal Atomic # 35 Polarization: 0.07 SS G_CDS: -0.69 Total: -0.63 kcal Total: -57.18 1.47 -55.71 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258915947.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.899 kcal (2) G-P(sol) polarization free energy of solvation -57.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds