Wall clock time and date at job start Mon Mar 30 2020 07:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 180.02562 * 9 7 2 11 11 C 1.39606 * 119.99807 * 179.97438 * 10 9 7 12 12 C 1.34107 * 125.23297 * 179.97438 * 11 10 9 13 13 C 1.38623 * 114.71743 * 179.97438 * 12 11 10 14 14 Br 1.89100 * 122.51689 * 179.97438 * 13 12 11 15 15 C 1.33276 * 114.96650 * 0.02562 * 13 12 11 16 16 S 1.75859 * 109.74416 * 359.75492 * 15 13 12 17 17 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 19 19 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 20 20 H 0.96995 * 120.00050 * 359.72380 * 10 9 7 21 21 H 1.07997 * 122.63717 * 0.02562 * 12 11 10 22 22 H 1.07997 * 125.12938 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6127 0.0018 11 6 1.7379 -4.9289 0.0025 12 6 2.5127 -6.0234 0.0032 13 6 1.8199 -7.2241 0.0045 14 35 2.6930 -8.9015 0.0049 15 6 0.4923 -7.1075 0.0043 16 16 0.0453 -5.4067 0.0095 17 1 -0.4850 0.8400 -0.0004 18 1 0.6248 -2.5571 -0.8897 19 1 0.6241 -2.5568 0.8903 20 1 3.1568 -3.4354 -0.0016 21 1 3.5915 -5.9733 0.0036 22 1 -0.2041 -7.9330 0.0055 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258968573.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:02 Heat of formation + Delta-G solvation = 25.195853 kcal Electronic energy + Delta-G solvation = -9900.662424 eV Core-core repulsion = 7821.211901 eV Total energy + Delta-G solvation = -2079.450523 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.70909 -35.10605 -32.69998 -30.50748 -28.39866 -26.17192 -23.01962 -22.21322 -19.15943 -17.34488 -16.58546 -15.38151 -14.83431 -13.87749 -13.77897 -13.48161 -12.47157 -12.45878 -12.21413 -11.65970 -11.09353 -11.00138 -10.57574 -10.51074 -10.35873 -9.95621 -9.57502 -9.45228 -8.67269 -8.01669 -6.76435 -6.32266 -4.39160 1.55187 1.56862 1.90145 2.77010 3.03977 3.17094 3.23750 3.26298 4.13065 4.39883 5.05232 5.48237 5.83790 6.19180 6.43411 6.59400 6.89851 7.18578 7.43304 7.75367 7.91016 8.35225 8.69552 9.27827 10.78203 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.067358 B = 0.004529 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.588783 B = 6181.478083 C = 6581.920488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.244 3.756 10 N -0.692 5.692 11 C 0.162 3.838 12 C -0.291 4.291 13 C -0.029 4.029 14 Br -0.057 7.057 15 C -0.267 4.267 16 S 0.133 5.867 17 H 0.268 0.732 18 H 0.026 0.974 19 H 0.026 0.974 20 H 0.401 0.599 21 H 0.136 0.864 22 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.677 -14.873 0.010 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.123 3.877 10 N -0.318 5.318 11 C -0.067 4.067 12 C -0.325 4.325 13 C -0.122 4.122 14 Br 0.026 6.974 15 C -0.405 4.405 16 S 0.385 5.615 17 H 0.078 0.922 18 H 0.044 0.956 19 H 0.044 0.956 20 H 0.237 0.763 21 H 0.154 0.846 22 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.363 -14.369 0.026 14.434 hybrid contribution 1.892 0.592 -0.020 1.982 sum 3.254 -13.777 0.006 14.156 Atomic orbital electron populations 1.69939 1.06119 1.27659 1.48643 1.24935 0.94983 0.99590 0.94357 0.86350 0.79646 0.82240 0.78364 1.20325 1.20849 1.19662 1.21093 0.93441 0.89970 1.53623 0.91657 1.19346 0.88416 0.82775 0.97167 1.45135 1.10137 1.00414 1.76146 1.22236 0.96430 0.89610 0.98379 1.19132 1.00383 0.88904 1.24074 1.20079 0.93356 0.91067 1.07649 1.96570 1.79502 1.23399 1.97922 1.24986 0.97263 0.99837 1.18456 1.84564 1.03075 0.97691 1.76148 0.92234 0.95602 0.95586 0.76252 0.84646 0.81989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 13.29 55.43 0.74 -24.03 14 2 C 0.07 1.74 5.46 -17.82 -0.10 1.65 14 3 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 14 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 14 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 14 6 H -0.27 -5.98 7.11 56.52 0.40 -5.57 14 7 C -0.54 -14.21 9.28 -34.44 -0.32 -14.53 14 8 H 0.07 1.64 7.60 -52.48 -0.40 1.24 14 9 C 0.24 5.95 5.39 -5.19 -0.03 5.93 14 10 N -0.69 -14.20 5.75 -60.80 -0.35 -14.55 14 11 C 0.16 3.05 7.24 -15.46 -0.11 2.94 14 12 C -0.29 -5.00 10.07 -40.89 -0.41 -5.41 14 13 C -0.03 -0.46 6.17 -41.17 -0.25 -0.72 14 14 Br -0.06 -0.77 33.86 -68.01 -2.30 -3.08 14 15 C -0.27 -4.08 11.03 29.00 0.32 -3.76 14 16 S 0.13 2.29 22.57 -107.50 -2.43 -0.14 14 17 H 0.27 7.04 8.31 -40.82 -0.34 6.70 14 18 H 0.03 0.68 8.14 -51.93 -0.42 0.26 14 19 H 0.03 0.69 8.14 -51.93 -0.42 0.26 14 20 H 0.40 7.63 8.43 -40.82 -0.34 7.28 14 21 H 0.14 2.19 8.06 -52.49 -0.42 1.77 14 22 H 0.16 2.09 8.06 -52.49 -0.42 1.67 14 LS Contribution 237.68 15.07 3.58 3.58 Total: -1.00 -26.62 237.68 -8.25 -34.87 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -1.57 Total: 1.97 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -0.90 Total: -13.92 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.39 Total: -38.58 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.43 Total: -0.14 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.30 Total: -3.08 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -26.62 -8.25 -34.87 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258968573.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.069 kcal (2) G-P(sol) polarization free energy of solvation -26.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds