Wall clock time and date at job start Mon Mar 30 2020 07:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 180.02562 * 9 7 2 11 11 C 1.39606 * 119.99807 * 179.97438 * 10 9 7 12 12 C 1.34107 * 125.23297 * 179.97438 * 11 10 9 13 13 C 1.38623 * 114.71743 * 179.97438 * 12 11 10 14 14 Br 1.89100 * 122.51689 * 179.97438 * 13 12 11 15 15 C 1.33276 * 114.96650 * 0.02562 * 13 12 11 16 16 S 1.75859 * 109.74416 * 359.75492 * 15 13 12 17 17 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 19 19 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 20 20 H 0.96995 * 120.00050 * 359.72380 * 10 9 7 21 21 H 1.07997 * 122.63717 * 0.02562 * 12 11 10 22 22 H 1.07997 * 125.12938 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6127 0.0018 11 6 1.7379 -4.9289 0.0025 12 6 2.5127 -6.0234 0.0032 13 6 1.8199 -7.2241 0.0045 14 35 2.6930 -8.9015 0.0049 15 6 0.4923 -7.1075 0.0043 16 16 0.0453 -5.4067 0.0095 17 1 -0.4850 0.8400 -0.0004 18 1 0.6248 -2.5571 -0.8897 19 1 0.6241 -2.5568 0.8903 20 1 3.1568 -3.4354 -0.0016 21 1 3.5915 -5.9733 0.0036 22 1 -0.2041 -7.9330 0.0055 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258968573.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:02 Heat of formation + Delta-G solvation = 9.576495 kcal Electronic energy + Delta-G solvation = -9901.339730 eV Core-core repulsion = 7821.211901 eV Total energy + Delta-G solvation = -2080.127830 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.11446 -36.73812 -34.59386 -31.81331 -29.99481 -27.84627 -24.73228 -23.81162 -20.59779 -18.88660 -18.34216 -17.00017 -16.57789 -15.38732 -15.34886 -15.04680 -14.15783 -14.06336 -13.74753 -13.09358 -12.82257 -12.74896 -12.24152 -11.97074 -11.83225 -11.49759 -11.14769 -10.93666 -10.58277 -9.37415 -8.34036 -8.27916 -6.48420 0.22051 0.26632 0.53647 1.41858 1.42588 1.46158 1.54061 1.67578 2.31982 2.76401 3.01910 4.25486 4.49394 4.78669 4.89977 5.12229 5.17660 5.30162 5.49237 5.79387 6.18754 6.58446 6.88506 7.23994 8.77564 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.067358 B = 0.004529 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.588783 B = 6181.478083 C = 6581.920488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.978 3.022 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.560 4.560 8 H 0.073 0.927 9 C 0.266 3.734 10 N -0.701 5.701 11 C 0.129 3.871 12 C -0.272 4.272 13 C -0.050 4.050 14 Br -0.027 7.027 15 C -0.238 4.238 16 S 0.113 5.887 17 H 0.271 0.729 18 H 0.000 1.000 19 H 0.000 1.000 20 H 0.407 0.593 21 H 0.146 0.854 22 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.617 -15.815 0.012 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.802 3.198 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.598 4.598 8 H 0.092 0.908 9 C 0.143 3.857 10 N -0.330 5.330 11 C -0.096 4.096 12 C -0.307 4.307 13 C -0.143 4.143 14 Br 0.056 6.944 15 C -0.377 4.377 16 S 0.366 5.634 17 H 0.080 0.920 18 H 0.017 0.983 19 H 0.018 0.982 20 H 0.244 0.756 21 H 0.164 0.836 22 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.310 -15.361 0.027 15.534 hybrid contribution 1.587 0.657 -0.022 1.718 sum 3.897 -14.704 0.005 15.212 Atomic orbital electron populations 1.70061 1.07764 1.28688 1.49641 1.25883 0.95810 1.03333 0.93781 0.85250 0.78466 0.77556 0.78562 1.19693 1.20558 1.18682 1.21500 0.94081 0.90906 1.53301 0.90846 1.18793 0.88418 0.83857 0.94632 1.44687 1.09579 1.00305 1.78468 1.22407 0.97277 0.89245 1.00681 1.19374 1.00932 0.88881 1.21498 1.20240 0.93753 0.92097 1.08174 1.96599 1.78996 1.20904 1.97869 1.25355 0.97654 0.99181 1.15504 1.84685 1.02997 0.99606 1.76081 0.92041 0.98264 0.98241 0.75645 0.83646 0.79070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.57 13.29 21.45 0.28 -52.29 14 2 C 0.01 0.67 5.46 84.65 0.46 1.13 14 3 Si 0.98 41.50 29.54 68.60 2.03 43.53 14 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 14 5 H -0.28 -11.67 7.11 99.48 0.71 -10.97 14 6 H -0.26 -10.66 7.11 99.48 0.71 -9.96 14 7 C -0.56 -29.69 9.28 25.60 0.24 -29.45 14 8 H 0.07 3.67 7.60 -2.91 -0.02 3.65 14 9 C 0.27 13.41 5.39 85.63 0.46 13.87 14 10 N -0.70 -29.25 5.75 -346.28 -1.99 -31.24 14 11 C 0.13 4.84 7.24 82.51 0.60 5.43 14 12 C -0.27 -8.97 10.07 21.42 0.22 -8.76 14 13 C -0.05 -1.49 6.17 21.24 0.13 -1.36 14 14 Br -0.03 -0.65 33.86 -20.37 -0.69 -1.34 14 15 C -0.24 -6.74 11.03 66.70 0.74 -6.01 14 16 S 0.11 3.88 22.57 -56.49 -1.27 2.60 14 17 H 0.27 14.43 8.31 -92.71 -0.77 13.65 14 18 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 14 19 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 14 20 H 0.41 15.58 8.43 -92.71 -0.78 14.80 14 21 H 0.15 4.44 8.06 -2.91 -0.02 4.42 14 22 H 0.19 4.24 8.06 -2.91 -0.02 4.22 14 Total: -1.00 -56.28 237.68 1.66 -54.63 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.46 Total: 9.25 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 2.84 Total: -25.14 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -1.70 Total: -83.53 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.27 Total: 2.60 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -0.69 Total: -1.34 kcal Total: -56.28 1.66 -54.63 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258968573.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.204 kcal (2) G-P(sol) polarization free energy of solvation -56.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds