Wall clock time and date at job start Mon Mar 30 2020 07:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30652 * 1 3 3 Si 1.86797 * 120.00305 * 2 1 4 4 H 1.48506 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47156 * 300.00238 * 3 2 1 6 6 H 1.48498 * 109.46745 * 60.00323 * 3 2 1 7 7 C 1.40177 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.41045 * 120.00230 * 359.97438 * 7 2 1 10 10 N 1.33958 * 119.60863 * 179.97438 * 9 7 2 11 11 C 1.31686 * 119.56746 * 179.74835 * 10 9 7 12 12 C 1.40557 * 118.82862 * 0.51471 * 11 10 9 13 13 C 1.47844 * 120.39247 * 179.75928 * 12 11 10 14 14 C 1.39694 * 120.15974 * 312.18023 * 13 12 11 15 15 C 1.37874 * 119.85974 * 179.72690 * 14 13 12 16 16 C 1.38465 * 120.18517 * 0.27445 * 15 14 13 17 17 C 1.38338 * 120.32122 * 359.97438 * 16 15 14 18 18 C 1.38084 * 120.13634 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 120.09521 * 179.97438 * 18 17 16 20 20 N 1.33504 * 119.21176 * 359.48768 * 12 11 10 21 21 N 1.28769 * 120.36052 * 0.25169 * 20 12 11 22 22 H 0.97003 * 119.99649 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.58906 * 180.24999 * 11 10 9 24 24 H 1.07999 * 120.07587 * 359.97438 * 14 13 12 25 25 H 1.08004 * 119.91211 * 180.24960 * 15 14 13 26 26 H 1.07995 * 119.84009 * 179.97438 * 16 15 14 27 27 H 1.08001 * 119.93491 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.7006 1.3462 -0.0006 5 1 1.8819 2.3964 -1.2124 6 1 1.8819 2.3963 1.2125 7 6 2.0073 -1.2140 -0.0005 8 1 3.0873 -1.2141 -0.0001 9 6 1.3021 -2.4355 -0.0005 10 7 1.9797 -3.5910 -0.0016 11 6 1.3204 -4.7309 0.0034 12 6 -0.0848 -4.7012 -0.0013 13 6 -0.8596 -5.9604 -0.0012 14 6 -0.5337 -6.9850 -0.8931 15 6 -1.2568 -8.1589 -0.8838 16 6 -2.3079 -8.3222 0.0026 17 6 -2.6404 -7.3105 0.8856 18 6 -1.9251 -6.1293 0.8878 19 17 -2.3438 -4.8601 1.9959 20 7 -0.7116 -3.5224 -0.0002 21 7 -0.0361 -2.4261 0.0001 22 1 -0.4850 0.8401 0.0004 23 1 1.8501 -5.6721 0.0068 24 1 0.2854 -6.8595 -1.5856 25 1 -1.0030 -8.9532 -1.5703 26 1 -2.8708 -9.2438 0.0048 27 1 -3.4611 -7.4447 1.5747 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259671132.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:50 Heat of formation + Delta-G solvation = 78.016526 kcal Electronic energy + Delta-G solvation = -16136.451232 eV Core-core repulsion = 13306.400765 eV Total energy + Delta-G solvation = -2830.050467 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.036 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.72493 -38.52786 -35.80643 -34.31790 -33.05182 -32.22410 -30.43955 -29.41912 -26.53927 -23.95332 -23.22029 -22.03880 -21.13267 -18.25054 -17.11335 -16.73955 -15.48573 -15.32934 -14.90920 -14.51965 -13.78567 -13.60766 -13.41578 -12.98346 -12.93552 -11.65091 -11.54535 -11.48947 -11.28747 -11.17760 -11.02715 -10.54632 -10.36462 -10.25947 -10.04589 -9.77938 -9.58227 -8.98929 -8.48913 -8.01325 -7.40244 -6.88387 -5.03036 1.34774 1.51539 2.38377 2.50367 2.73594 2.93836 2.98069 3.00651 3.70642 3.93875 4.42067 5.03459 5.08382 5.14800 5.40758 5.50192 5.55928 5.67797 5.82279 5.92170 6.12680 6.18205 6.46300 6.56686 6.66741 6.78090 6.99485 7.03667 7.23239 7.84416 8.17641 8.22397 8.84565 9.88980 10.50568 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.037835 B = 0.005561 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.876862 B = 5033.795973 C = 5551.364642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.691 5.691 2 C 0.055 3.945 3 Si 0.927 3.073 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.365 4.365 8 H 0.100 0.900 9 C 0.306 3.694 10 N -0.542 5.542 11 C 0.156 3.844 12 C -0.142 4.142 13 C 0.034 3.966 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.129 4.129 17 C -0.113 4.113 18 C -0.026 4.026 19 Cl -0.056 7.056 20 N -0.150 5.150 21 N -0.277 5.277 22 H 0.285 0.715 23 H 0.144 0.856 24 H 0.127 0.873 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 -9.398 0.165 9.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.174 4.174 3 Si 0.749 3.251 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.400 4.400 8 H 0.118 0.882 9 C 0.072 3.928 10 N -0.264 5.264 11 C -0.027 4.027 12 C -0.287 4.287 13 C 0.030 3.970 14 C -0.130 4.130 15 C -0.134 4.134 16 C -0.147 4.147 17 C -0.132 4.132 18 C -0.054 4.054 19 Cl -0.027 7.027 20 N -0.008 5.008 21 N -0.140 5.140 22 H 0.097 0.903 23 H 0.161 0.839 24 H 0.145 0.855 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.118 -8.077 0.267 8.662 hybrid contribution 0.692 -0.119 0.106 0.710 sum -2.426 -8.196 0.373 8.556 Atomic orbital electron populations 1.70050 1.07463 1.29448 1.24156 1.26287 0.95222 1.02009 0.93891 0.85936 0.80711 0.79424 0.79002 1.17876 1.19300 1.19307 1.19488 0.95279 0.87504 1.37764 0.88167 1.21269 0.89102 0.91529 0.90870 1.69207 1.39627 0.98518 1.19010 1.23351 0.91096 0.97187 0.91089 1.20919 0.93170 0.93961 1.20614 1.18270 0.92879 0.92505 0.93299 1.21212 1.00602 0.92881 0.98333 1.21040 0.96008 0.97337 0.99064 1.21001 0.98404 0.98675 0.96664 1.20921 0.99921 0.92196 1.00147 1.21136 0.97976 0.90734 0.95560 1.98377 1.92449 1.51196 1.60698 1.73910 1.32205 0.94818 0.99878 1.74995 1.06017 1.13897 1.19049 0.90318 0.83892 0.85464 0.85901 0.85843 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.77 11.44 55.56 0.64 -17.13 15 2 C 0.06 1.34 5.50 -17.33 -0.10 1.25 15 3 Si 0.93 17.55 29.56 -169.99 -5.02 12.53 15 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 15 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 6 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 7 C -0.36 -9.58 9.37 -37.79 -0.35 -9.94 15 8 H 0.10 2.48 7.85 -52.49 -0.41 2.07 15 9 C 0.31 8.53 7.42 -157.76 -1.17 7.36 15 10 N -0.54 -13.95 10.45 -12.26 -0.13 -14.08 15 11 C 0.16 3.51 10.77 -16.74 -0.18 3.33 15 12 C -0.14 -3.26 5.96 -82.34 -0.49 -3.75 15 13 C 0.03 0.65 5.65 -104.84 -0.59 0.06 15 14 C -0.11 -1.72 9.51 -39.17 -0.37 -2.09 15 15 C -0.12 -1.48 10.03 -39.63 -0.40 -1.87 15 16 C -0.13 -1.59 10.04 -39.46 -0.40 -1.99 15 17 C -0.11 -1.63 9.82 -39.60 -0.39 -2.02 15 18 C -0.03 -0.47 6.34 -39.06 -0.25 -0.72 15 19 Cl -0.06 -1.10 26.96 -51.86 -1.40 -2.50 15 20 N -0.15 -3.96 10.14 33.53 0.34 -3.62 15 21 N -0.28 -7.90 9.06 30.81 0.28 -7.62 15 22 H 0.29 6.50 8.29 -40.82 -0.34 6.16 15 23 H 0.14 2.60 8.04 -52.49 -0.42 2.18 15 24 H 0.13 1.80 8.01 -52.49 -0.42 1.38 15 25 H 0.12 1.18 8.06 -52.48 -0.42 0.76 15 26 H 0.12 1.14 8.06 -52.49 -0.42 0.71 15 27 H 0.13 1.55 8.06 -52.49 -0.42 1.12 15 LS Contribution 265.70 15.07 4.00 4.00 Total: -1.00 -30.27 265.70 -7.63 -37.90 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -1.66 Total: 0.91 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -4.69 Total: -10.39 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 1.13 Total: -42.46 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.02 Total: 12.53 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.40 Total: -2.50 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.27 -7.63 -37.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259671132.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.921 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds