Wall clock time and date at job start Mon Mar 30 2020 07:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30652 * 1 3 3 Si 1.86797 * 120.00305 * 2 1 4 4 H 1.48506 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47156 * 300.00238 * 3 2 1 6 6 H 1.48498 * 109.46745 * 60.00323 * 3 2 1 7 7 C 1.40177 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.41045 * 120.00230 * 359.97438 * 7 2 1 10 10 N 1.33958 * 119.60863 * 179.97438 * 9 7 2 11 11 C 1.31686 * 119.56746 * 179.74835 * 10 9 7 12 12 C 1.40557 * 118.82862 * 0.51471 * 11 10 9 13 13 C 1.47844 * 120.39247 * 179.75928 * 12 11 10 14 14 C 1.39694 * 120.15974 * 312.18023 * 13 12 11 15 15 C 1.37874 * 119.85974 * 179.72690 * 14 13 12 16 16 C 1.38465 * 120.18517 * 0.27445 * 15 14 13 17 17 C 1.38338 * 120.32122 * 359.97438 * 16 15 14 18 18 C 1.38084 * 120.13634 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 120.09521 * 179.97438 * 18 17 16 20 20 N 1.33504 * 119.21176 * 359.48768 * 12 11 10 21 21 N 1.28769 * 120.36052 * 0.25169 * 20 12 11 22 22 H 0.97003 * 119.99649 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.58906 * 180.24999 * 11 10 9 24 24 H 1.07999 * 120.07587 * 359.97438 * 14 13 12 25 25 H 1.08004 * 119.91211 * 180.24960 * 15 14 13 26 26 H 1.07995 * 119.84009 * 179.97438 * 16 15 14 27 27 H 1.08001 * 119.93491 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.7006 1.3462 -0.0006 5 1 1.8819 2.3964 -1.2124 6 1 1.8819 2.3963 1.2125 7 6 2.0073 -1.2140 -0.0005 8 1 3.0873 -1.2141 -0.0001 9 6 1.3021 -2.4355 -0.0005 10 7 1.9797 -3.5910 -0.0016 11 6 1.3204 -4.7309 0.0034 12 6 -0.0848 -4.7012 -0.0013 13 6 -0.8596 -5.9604 -0.0012 14 6 -0.5337 -6.9850 -0.8931 15 6 -1.2568 -8.1589 -0.8838 16 6 -2.3079 -8.3222 0.0026 17 6 -2.6404 -7.3105 0.8856 18 6 -1.9251 -6.1293 0.8878 19 17 -2.3438 -4.8601 1.9959 20 7 -0.7116 -3.5224 -0.0002 21 7 -0.0361 -2.4261 0.0001 22 1 -0.4850 0.8401 0.0004 23 1 1.8501 -5.6721 0.0068 24 1 0.2854 -6.8595 -1.5856 25 1 -1.0030 -8.9532 -1.5703 26 1 -2.8708 -9.2438 0.0048 27 1 -3.4611 -7.4447 1.5747 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259671132.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:49 Heat of formation + Delta-G solvation = 59.207055 kcal Electronic energy + Delta-G solvation = -16137.266872 eV Core-core repulsion = 13306.400765 eV Total energy + Delta-G solvation = -2830.866107 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.036 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.53749 -39.83422 -37.20749 -36.13064 -34.97356 -33.81060 -31.62461 -31.02737 -28.30521 -25.79549 -24.87500 -23.28614 -22.57709 -20.12280 -18.76765 -18.21784 -17.16068 -16.73073 -16.31000 -16.16716 -15.37865 -15.01187 -14.69860 -14.56938 -14.28275 -13.27553 -13.16073 -13.05424 -12.86833 -12.42005 -12.34801 -12.21081 -12.02518 -11.94456 -11.79524 -11.53112 -11.30145 -10.58756 -9.77504 -9.61537 -9.19350 -8.67832 -6.97680 -0.02371 0.35284 0.53668 0.77973 1.37364 1.38397 1.48678 1.57346 2.13350 2.56397 2.79996 3.56031 3.59952 3.67233 3.88111 4.04066 4.15451 4.35910 4.48463 4.54156 4.73262 4.88501 5.01402 5.08790 5.26681 5.45346 5.51102 5.59472 5.90048 5.97188 6.26953 6.37042 6.92136 8.14754 8.57686 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.037835 B = 0.005561 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.876862 B = 5033.795973 C = 5551.364642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.014 3.986 3 Si 1.010 2.990 4 H -0.248 1.248 5 H -0.259 1.259 6 H -0.260 1.260 7 C -0.399 4.399 8 H 0.104 0.896 9 C 0.278 3.722 10 N -0.558 5.558 11 C 0.153 3.847 12 C -0.122 4.122 13 C -0.011 4.011 14 C -0.109 4.109 15 C -0.103 4.103 16 C -0.106 4.106 17 C -0.115 4.115 18 C -0.046 4.046 19 Cl -0.087 7.087 20 N -0.183 5.183 21 N -0.322 5.322 22 H 0.293 0.707 23 H 0.189 0.811 24 H 0.138 0.862 25 H 0.167 0.833 26 H 0.170 0.830 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.513 -12.062 -0.538 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.211 4.211 3 Si 0.827 3.173 4 H -0.171 1.171 5 H -0.183 1.183 6 H -0.185 1.185 7 C -0.435 4.435 8 H 0.122 0.878 9 C 0.043 3.957 10 N -0.281 5.281 11 C -0.030 4.030 12 C -0.270 4.270 13 C -0.014 4.014 14 C -0.128 4.128 15 C -0.121 4.121 16 C -0.124 4.124 17 C -0.133 4.133 18 C -0.073 4.073 19 Cl -0.058 7.058 20 N -0.038 5.038 21 N -0.183 5.183 22 H 0.105 0.895 23 H 0.206 0.794 24 H 0.156 0.844 25 H 0.184 0.816 26 H 0.187 0.813 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.154 -10.750 -0.437 11.212 hybrid contribution 0.577 0.269 0.287 0.698 sum -2.577 -10.481 -0.150 10.795 Atomic orbital electron populations 1.70140 1.09389 1.30958 1.25212 1.27346 0.95943 1.05364 0.92425 0.84745 0.79210 0.73905 0.79392 1.17117 1.18289 1.18474 1.19852 0.95649 0.88346 1.39671 0.87767 1.21704 0.89454 0.92778 0.91798 1.69229 1.40129 0.99066 1.19630 1.24111 0.91527 0.97870 0.89523 1.21572 0.94001 0.94579 1.16878 1.18330 0.94516 0.92092 0.96442 1.21423 1.01187 0.92831 0.97396 1.21531 0.94711 0.96882 0.98998 1.21585 0.97458 0.99154 0.94202 1.21260 0.99906 0.91169 1.00994 1.21389 0.98800 0.91434 0.95727 1.98365 1.92677 1.52948 1.61816 1.73782 1.32975 0.95793 1.01225 1.74941 1.06473 1.15188 1.21676 0.89529 0.79446 0.84402 0.81583 0.81295 0.83426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.69 11.44 21.86 0.25 -39.44 15 2 C 0.01 0.72 5.50 85.34 0.47 1.19 15 3 Si 1.01 36.62 29.56 68.60 2.03 38.65 15 4 H -0.25 -8.58 7.11 99.48 0.71 -7.87 15 5 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 6 H -0.26 -9.02 7.11 99.48 0.71 -8.31 15 7 C -0.40 -21.94 9.37 23.43 0.22 -21.72 15 8 H 0.10 5.37 7.85 -2.91 -0.02 5.35 15 9 C 0.28 16.22 7.42 134.75 1.00 17.22 15 10 N -0.56 -29.58 10.45 -192.70 -2.01 -31.59 15 11 C 0.15 6.92 10.77 85.28 0.92 7.83 15 12 C -0.12 -5.69 5.96 42.00 0.25 -5.44 15 13 C -0.01 -0.39 5.65 -20.01 -0.11 -0.51 15 14 C -0.11 -3.03 9.51 22.54 0.21 -2.82 15 15 C -0.10 -2.05 10.03 22.24 0.22 -1.83 15 16 C -0.11 -2.01 10.04 22.35 0.22 -1.79 15 17 C -0.11 -2.93 9.82 22.26 0.22 -2.71 15 18 C -0.05 -1.61 6.34 22.61 0.14 -1.47 15 19 Cl -0.09 -3.49 26.96 -2.72 -0.07 -3.56 15 20 N -0.18 -10.13 10.14 -47.83 -0.49 -10.61 15 21 N -0.32 -19.44 9.06 -56.43 -0.51 -19.95 15 22 H 0.29 13.98 8.29 -92.71 -0.77 13.21 15 23 H 0.19 6.51 8.04 -2.91 -0.02 6.48 15 24 H 0.14 3.47 8.01 -2.91 -0.02 3.45 15 25 H 0.17 1.97 8.06 -2.91 -0.02 1.94 15 26 H 0.17 1.81 8.06 -2.91 -0.02 1.78 15 27 H 0.15 3.10 8.06 -2.91 -0.02 3.08 15 Total: -1.00 -71.79 265.70 4.17 -67.61 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.21 Total: 10.93 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 3.77 Total: -12.04 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -2.76 Total: -101.59 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Atomic # 17 Polarization: -3.49 SS G_CDS: -0.07 Total: -3.56 kcal Total: -71.79 4.17 -67.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259671132.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.819 kcal (2) G-P(sol) polarization free energy of solvation -71.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds