Wall clock time and date at job start Mon Mar 30 2020 07:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29264 * 124.69398 * 2 1 4 4 C 1.31099 * 117.45852 * 180.02562 * 3 2 1 5 5 C 1.36730 * 113.90074 * 0.02562 * 4 3 2 6 6 C 1.46566 * 126.18147 * 179.97438 * 5 4 3 7 7 O 1.34407 * 126.90826 * 0.02562 * 6 5 4 8 8 N 1.20569 * 113.50544 * 180.02562 * 7 6 5 9 9 C 1.32064 * 112.58252 * 0.02562 * 8 7 6 10 10 C 1.41485 * 127.42126 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00279 * 185.96499 * 10 9 8 12 12 C 1.40068 * 120.00186 * 5.96323 * 10 9 8 13 13 N 1.30710 * 120.00426 * 184.33031 * 12 10 9 14 14 Si 1.86804 * 119.99621 * 4.32858 * 12 10 9 15 15 H 1.48503 * 109.46911 * 180.02562 * 14 12 10 16 16 H 1.48497 * 109.47042 * 299.99823 * 14 12 10 17 17 H 1.48498 * 109.47273 * 59.99979 * 14 12 10 18 18 C 1.39966 * 126.90804 * 180.31785 * 6 5 4 19 19 C 1.43204 * 128.71814 * 359.97438 * 18 6 5 20 20 N 5.18741 * 122.61920 * 180.30373 * 2 1 3 21 21 S 1.70924 * 124.69192 * 180.35828 * 2 1 3 22 22 H 1.08997 * 109.47401 * 89.97193 * 1 2 3 23 23 H 1.09006 * 109.47319 * 209.97254 * 1 2 3 24 24 H 1.08994 * 109.47060 * 329.97341 * 1 2 3 25 25 H 1.08003 * 123.05137 * 180.02562 * 4 3 2 26 26 H 0.96999 * 119.99860 * 354.84474 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2427 1.0628 0.0000 4 6 3.5433 0.8977 -0.0005 5 6 3.9354 -0.4122 -0.0016 6 6 5.3168 -0.9018 -0.0029 7 8 6.4367 -0.1585 -0.0028 8 7 7.4488 -0.8137 -0.0045 9 6 7.2118 -2.1129 -0.0066 10 6 8.1629 -3.1604 -0.0095 11 1 7.8373 -4.1853 -0.1083 12 6 9.5271 -2.8680 0.1156 13 7 10.4116 -3.8264 0.0281 14 14 10.0822 -1.1084 0.4075 15 1 11.5635 -1.0660 0.5024 16 1 9.6343 -0.2543 -0.7217 17 1 9.4900 -0.6061 1.6733 18 6 5.7352 -2.2375 -0.0101 19 6 4.9367 -3.4262 -0.0174 20 7 4.3032 -4.3692 -0.0232 21 16 2.4798 -1.4053 -0.0088 22 1 -0.3634 0.0005 -1.0276 23 1 -0.3634 -0.8903 0.5134 24 1 -0.3633 0.8897 0.5142 25 1 4.2416 1.7216 -0.0002 26 1 10.1214 -4.7488 -0.0485 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259764788.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:14 Heat of formation + Delta-G solvation = 91.509635 kcal Electronic energy + Delta-G solvation = -16020.245949 eV Core-core repulsion = 13192.824293 eV Total energy + Delta-G solvation = -2827.421655 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.031 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -45.04578 -40.72733 -37.79498 -36.33695 -34.56446 -33.97425 -32.13154 -28.94781 -28.39010 -25.40711 -25.00868 -22.97660 -21.21975 -20.18782 -19.31913 -18.77178 -18.27577 -17.61627 -16.18294 -15.97439 -15.64034 -15.49390 -14.86141 -14.77425 -14.65486 -14.46533 -14.07135 -13.69160 -13.58345 -13.16178 -13.07963 -12.86071 -12.29863 -11.90271 -11.54014 -11.44994 -10.95719 -10.82183 -10.73437 -10.26623 -9.52616 -9.36805 -7.05264 -1.07215 -0.05225 0.47559 0.51751 1.02111 1.46141 1.48013 1.67235 1.77349 1.82827 2.15063 2.29892 2.32065 2.95844 3.02739 3.12742 3.46891 3.94961 4.01371 4.24334 4.38729 4.58395 4.63972 4.68423 4.97037 5.18023 5.28781 5.78049 5.88250 6.38602 6.44931 6.51475 7.78922 7.89193 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.035589 B = 0.006110 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.577945 B = 4581.570177 C = 5344.631976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.064 3.936 3 N -0.492 5.492 4 C 0.107 3.893 5 C -0.219 4.219 6 C 0.132 3.868 7 O 0.094 5.906 8 N -0.492 5.492 9 C 0.197 3.803 10 C -0.501 4.501 11 H 0.067 0.933 12 C 0.026 3.974 13 N -0.820 5.820 14 Si 1.120 2.880 15 H -0.284 1.284 16 H -0.255 1.255 17 H -0.271 1.271 18 C -0.240 4.240 19 C 0.314 3.686 20 N -0.451 5.451 21 S 0.177 5.823 22 H 0.109 0.891 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.209 0.791 26 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.368 9.383 0.285 18.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.210 4.210 3 N -0.206 5.206 4 C -0.051 4.051 5 C -0.340 4.340 6 C 0.058 3.942 7 O 0.053 5.947 8 N -0.226 5.226 9 C 0.054 3.946 10 C -0.539 4.539 11 H 0.085 0.915 12 C -0.193 4.193 13 N -0.444 5.444 14 Si 0.942 3.058 15 H -0.211 1.211 16 H -0.180 1.180 17 H -0.196 1.196 18 C -0.250 4.250 19 C 0.002 3.998 20 N -0.130 5.130 21 S 0.435 5.565 22 H 0.127 0.873 23 H 0.120 0.880 24 H 0.124 0.876 25 H 0.225 0.775 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.517 8.967 0.399 17.926 hybrid contribution -0.462 -1.369 -0.219 1.461 sum -15.979 7.598 0.179 17.694 Atomic orbital electron populations 1.20784 0.81577 1.06034 1.05843 1.28187 1.03716 0.90112 0.99036 1.66255 1.04639 1.31574 1.18122 1.22897 0.91537 0.94752 0.95920 1.23263 0.92422 0.97950 1.20415 1.21178 0.87760 0.87968 0.97244 1.84502 1.08092 1.33456 1.68660 1.73499 1.03920 1.04803 1.40393 1.21383 0.89389 0.90771 0.93007 1.19939 0.92710 0.92921 1.48307 0.91490 1.28244 0.92129 1.09994 0.88915 1.70604 1.37934 1.02873 1.33021 0.82750 0.74173 0.68695 0.80186 1.21139 1.18010 1.19647 1.17854 0.92117 0.87929 1.27082 1.24016 0.91989 0.91779 0.92021 1.81107 1.09993 1.09030 1.12905 1.84425 0.94961 1.10786 1.66376 0.87253 0.88000 0.87593 0.77490 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.46 71.23 0.74 -0.15 15 2 C 0.06 1.32 7.37 88.48 0.65 1.97 15 3 N -0.49 -11.82 10.50 -189.51 -1.99 -13.81 15 4 C 0.11 2.73 11.39 84.45 0.96 3.69 15 5 C -0.22 -6.66 6.52 24.09 0.16 -6.50 15 6 C 0.13 5.02 7.38 24.86 0.18 5.21 15 7 O 0.09 3.86 11.08 68.54 0.76 4.62 15 8 N -0.49 -23.33 7.50 -47.82 -0.36 -23.69 15 9 C 0.20 9.90 6.74 42.55 0.29 10.19 15 10 C -0.50 -27.32 9.87 23.51 0.23 -27.09 15 11 H 0.07 3.82 8.05 -2.91 -0.02 3.80 15 12 C 0.03 1.36 5.52 85.30 0.47 1.83 15 13 N -0.82 -44.25 13.65 21.84 0.30 -43.95 15 14 Si 1.12 50.93 25.98 68.60 1.78 52.71 15 15 H -0.28 -12.26 7.11 99.48 0.71 -11.56 15 16 H -0.25 -11.41 6.78 99.48 0.67 -10.74 15 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 18 C -0.24 -10.61 6.43 -18.97 -0.12 -10.73 15 19 C 0.31 13.52 14.30 88.33 1.26 14.78 15 20 N -0.45 -19.10 18.54 19.00 0.35 -18.74 15 21 S 0.18 4.59 21.57 -56.49 -1.22 3.38 15 22 H 0.11 0.86 8.14 -2.39 -0.02 0.84 15 23 H 0.10 0.78 8.14 -2.38 -0.02 0.76 15 24 H 0.11 0.96 8.14 -2.39 -0.02 0.94 15 25 H 0.21 4.34 8.06 -2.91 -0.02 4.31 15 26 H 0.28 14.99 8.72 -92.71 -0.81 14.18 15 Total: -1.00 -60.79 265.04 5.63 -55.17 By element: Atomic # 1 Polarization: -10.04 SS G_CDS: 1.17 Total: -8.86 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 4.83 Total: -6.80 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -1.70 Total: -100.20 kcal Atomic # 8 Polarization: 3.86 SS G_CDS: 0.76 Total: 4.62 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 1.78 Total: 52.71 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.22 Total: 3.38 kcal Total: -60.79 5.63 -55.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259764788.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.675 kcal (2) G-P(sol) polarization free energy of solvation -60.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds