Wall clock time and date at job start Mon Mar 30 2020 07:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28744 * 124.72629 * 2 1 4 4 C 1.33521 * 115.75447 * 179.73280 * 3 2 1 5 5 C 1.47213 * 123.13395 * 179.97438 * 4 3 2 6 6 O 1.34307 * 126.87917 * 179.66002 * 5 4 3 7 7 N 1.20575 * 113.52583 * 179.84288 * 6 5 4 8 8 C 1.32061 * 112.50835 * 0.44161 * 7 6 5 9 9 C 1.41485 * 127.43608 * 179.76282 * 8 7 6 10 10 H 1.07998 * 120.00333 * 179.97438 * 9 8 7 11 11 C 1.40072 * 119.99648 * 359.96825 * 9 8 7 12 12 N 1.30707 * 119.99945 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99889 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46828 * 90.00423 * 13 11 9 15 15 H 1.48501 * 109.47246 * 210.00468 * 13 11 9 16 16 H 1.48498 * 109.47276 * 330.00800 * 13 11 9 17 17 C 1.39711 * 126.87967 * 359.97438 * 5 4 3 18 18 C 1.43202 * 128.70444 * 359.92869 * 17 5 4 19 19 N 4.53424 * 96.31162 * 359.81946 * 2 1 3 20 20 C 1.35227 * 113.72663 * 0.02562 * 4 3 2 21 21 S 1.70774 * 124.72353 * 179.69368 * 2 1 3 22 22 H 1.09000 * 109.47295 * 89.99978 * 1 2 3 23 23 H 1.08997 * 109.46842 * 210.00389 * 1 2 3 24 24 H 1.08998 * 109.47148 * 330.00138 * 1 2 3 25 25 H 0.97004 * 120.00238 * 179.97438 * 12 11 9 26 26 H 1.08006 * 125.57718 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2404 1.0581 0.0000 4 6 3.5592 0.8499 0.0056 5 6 4.5463 1.9421 0.0059 6 8 5.8837 1.8198 0.0177 7 7 6.4638 2.8768 0.0119 8 6 5.6374 3.9069 0.0047 9 6 5.9755 5.2808 0.0014 10 1 5.1964 6.0287 -0.0051 11 6 7.3208 5.6709 0.0066 12 7 8.2637 4.7657 0.0140 13 14 7.7673 7.4847 0.0029 14 1 7.8790 7.9698 1.4021 15 1 9.0663 7.6734 -0.6916 16 1 6.7116 8.2529 -0.7045 17 6 4.2794 3.3135 0.0002 18 6 3.0114 3.9789 -0.0087 19 7 2.0055 4.5067 -0.0142 20 6 3.9036 -0.4578 0.0098 21 16 2.4797 -1.4036 0.0075 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 9.1954 5.0358 0.0172 26 1 4.9132 -0.8417 0.0142 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259794628.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:19 Heat of formation + Delta-G solvation = 116.817970 kcal Electronic energy + Delta-G solvation = -16037.454729 eV Core-core repulsion = 13211.130525 eV Total energy + Delta-G solvation = -2826.324204 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.031 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.86062 -39.61220 -35.57999 -34.17537 -32.85600 -31.65947 -30.02272 -28.15600 -26.50281 -24.34995 -23.01652 -20.90207 -19.78956 -18.39591 -17.43550 -16.72830 -16.13291 -15.40136 -15.00390 -14.84560 -14.38788 -13.58548 -13.34885 -13.03441 -12.73414 -12.47005 -12.24596 -12.14096 -11.93224 -11.59657 -11.38963 -11.02140 -10.99153 -10.27593 -9.87321 -9.64379 -9.50954 -9.35433 -9.33659 -8.46236 -7.63532 -6.81082 -4.77280 0.64289 1.36432 1.77539 1.80912 2.91871 3.05124 3.09961 3.23367 3.54995 3.66631 3.66682 3.88139 4.43032 4.50745 5.01675 5.14608 5.20702 5.28313 5.37685 5.38305 5.78063 5.87677 6.00982 6.21414 6.60206 6.68250 7.07873 7.75461 8.09247 8.26220 8.56979 8.64916 10.08130 10.19292 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.037231 B = 0.005385 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.888332 B = 5198.411701 C = 5935.151847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.031 3.969 3 N -0.440 5.440 4 C 0.147 3.853 5 C 0.046 3.954 6 O 0.084 5.916 7 N -0.398 5.398 8 C 0.207 3.793 9 C -0.431 4.431 10 H 0.091 0.909 11 C 0.071 3.929 12 N -0.758 5.758 13 Si 0.920 3.080 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.260 1.260 17 C -0.185 4.185 18 C 0.330 3.670 19 N -0.466 5.466 20 C -0.270 4.270 21 S 0.175 5.825 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.283 0.717 26 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 -11.540 0.012 13.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.249 4.249 3 N -0.156 5.156 4 C 0.015 3.985 5 C -0.028 4.028 6 O 0.036 5.964 7 N -0.122 5.122 8 C 0.063 3.937 9 C -0.468 4.468 10 H 0.109 0.891 11 C -0.152 4.152 12 N -0.384 5.384 13 Si 0.744 3.256 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.183 1.183 17 C -0.196 4.196 18 C 0.017 3.983 19 N -0.145 5.145 20 C -0.411 4.411 21 S 0.430 5.570 22 H 0.104 0.896 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.093 0.907 26 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.056 -11.504 0.008 14.044 hybrid contribution 0.759 1.680 -0.009 1.844 sum -7.297 -9.824 -0.001 12.238 Atomic orbital electron populations 1.20421 0.85065 1.04158 1.03892 1.27048 1.02053 0.91145 1.04606 1.66775 1.02979 1.30925 1.14922 1.17454 0.87856 0.89559 1.03654 1.21193 0.86423 0.90380 1.04835 1.84716 1.12748 1.31090 1.67893 1.74605 1.14446 0.89938 1.33228 1.21181 0.82950 0.94802 0.94742 1.18784 0.92963 0.88820 1.46201 0.89055 1.25927 0.95920 1.00422 0.92904 1.69808 1.01371 1.35273 1.31982 0.86099 0.78747 0.81363 0.79421 1.19182 1.19951 1.18349 1.17956 0.89219 0.90717 1.21722 1.23921 0.90769 0.91721 0.91853 1.81015 1.11029 1.09994 1.12512 1.26449 1.05477 0.96601 1.12620 1.82548 0.95505 1.12092 1.66826 0.89640 0.90095 0.89259 0.90658 0.79580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.46 36.00 0.38 -0.34 15 2 C 0.03 0.42 7.34 -13.57 -0.10 0.32 15 3 N -0.44 -7.96 9.72 -8.51 -0.08 -8.04 15 4 C 0.15 2.72 6.70 -84.56 -0.57 2.16 15 5 C 0.05 1.01 7.31 -35.39 -0.26 0.76 15 6 O 0.08 1.98 11.03 16.56 0.18 2.17 15 7 N -0.40 -10.68 10.39 33.55 0.35 -10.33 15 8 C 0.21 5.58 7.02 -82.44 -0.58 5.00 15 9 C -0.43 -11.56 9.43 -37.66 -0.36 -11.92 15 10 H 0.09 2.36 7.85 -52.49 -0.41 1.95 15 11 C 0.07 1.80 5.50 -17.34 -0.10 1.71 15 12 N -0.76 -20.04 12.04 55.55 0.67 -19.37 15 13 Si 0.92 18.80 29.56 -169.99 -5.02 13.78 15 14 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 15 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 16 H -0.26 -5.27 7.11 56.52 0.40 -4.86 15 17 C -0.19 -4.55 6.42 -103.33 -0.66 -5.22 15 18 C 0.33 7.96 14.95 -22.47 -0.34 7.62 15 19 N -0.47 -11.14 18.54 41.84 0.78 -10.37 15 20 C -0.27 -3.91 10.89 29.66 0.32 -3.59 15 21 S 0.17 1.91 22.92 -107.50 -2.46 -0.55 15 22 H 0.09 0.71 8.14 -51.93 -0.42 0.28 15 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 15 24 H 0.09 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.28 6.74 8.29 -40.82 -0.34 6.40 15 26 H 0.19 2.34 8.06 -52.48 -0.42 1.92 15 LS Contribution 270.16 15.07 4.07 4.07 Total: -1.00 -30.82 270.16 -5.02 -35.83 By element: Atomic # 1 Polarization: -2.45 SS G_CDS: -1.24 Total: -3.68 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -2.25 Total: -3.50 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 1.71 Total: -48.11 kcal Atomic # 8 Polarization: 1.98 SS G_CDS: 0.18 Total: 2.17 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.46 Total: -0.55 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.82 -5.02 -35.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259794628.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.648 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds