Wall clock time and date at job start Mon Mar 30 2020 07:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28744 * 124.72629 * 2 1 4 4 C 1.33521 * 115.75447 * 179.73280 * 3 2 1 5 5 C 1.47213 * 123.13395 * 179.97438 * 4 3 2 6 6 O 1.34307 * 126.87917 * 179.66002 * 5 4 3 7 7 N 1.20575 * 113.52583 * 179.84288 * 6 5 4 8 8 C 1.32061 * 112.50835 * 0.44161 * 7 6 5 9 9 C 1.41485 * 127.43608 * 179.76282 * 8 7 6 10 10 H 1.07998 * 120.00333 * 179.97438 * 9 8 7 11 11 C 1.40072 * 119.99648 * 359.96825 * 9 8 7 12 12 N 1.30707 * 119.99945 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99889 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46828 * 90.00423 * 13 11 9 15 15 H 1.48501 * 109.47246 * 210.00468 * 13 11 9 16 16 H 1.48498 * 109.47276 * 330.00800 * 13 11 9 17 17 C 1.39711 * 126.87967 * 359.97438 * 5 4 3 18 18 C 1.43202 * 128.70444 * 359.92869 * 17 5 4 19 19 N 4.53424 * 96.31162 * 359.81946 * 2 1 3 20 20 C 1.35227 * 113.72663 * 0.02562 * 4 3 2 21 21 S 1.70774 * 124.72353 * 179.69368 * 2 1 3 22 22 H 1.09000 * 109.47295 * 89.99978 * 1 2 3 23 23 H 1.08997 * 109.46842 * 210.00389 * 1 2 3 24 24 H 1.08998 * 109.47148 * 330.00138 * 1 2 3 25 25 H 0.97004 * 120.00238 * 179.97438 * 12 11 9 26 26 H 1.08006 * 125.57718 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2404 1.0581 0.0000 4 6 3.5592 0.8499 0.0056 5 6 4.5463 1.9421 0.0059 6 8 5.8837 1.8198 0.0177 7 7 6.4638 2.8768 0.0119 8 6 5.6374 3.9069 0.0047 9 6 5.9755 5.2808 0.0014 10 1 5.1964 6.0287 -0.0051 11 6 7.3208 5.6709 0.0066 12 7 8.2637 4.7657 0.0140 13 14 7.7673 7.4847 0.0029 14 1 7.8790 7.9698 1.4021 15 1 9.0663 7.6734 -0.6916 16 1 6.7116 8.2529 -0.7045 17 6 4.2794 3.3135 0.0002 18 6 3.0114 3.9789 -0.0087 19 7 2.0055 4.5067 -0.0142 20 6 3.9036 -0.4578 0.0098 21 16 2.4797 -1.4036 0.0075 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 9.1954 5.0358 0.0172 26 1 4.9132 -0.8417 0.0142 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259794628.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:19 Heat of formation + Delta-G solvation = 96.930360 kcal Electronic energy + Delta-G solvation = -16038.317120 eV Core-core repulsion = 13211.130525 eV Total energy + Delta-G solvation = -2827.186595 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.031 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.75641 -40.81326 -37.46471 -36.09355 -34.13535 -33.50367 -31.55976 -29.32929 -28.43659 -25.75004 -24.76942 -22.47609 -21.18224 -19.77192 -19.30063 -18.16506 -18.00318 -17.25975 -16.61917 -15.96923 -15.66427 -15.20069 -14.77394 -14.39046 -14.30648 -14.01230 -13.62727 -13.57223 -13.23301 -13.08138 -13.03176 -12.94275 -12.50372 -11.94699 -11.68021 -11.28081 -10.77377 -10.72259 -10.57710 -10.39583 -9.13518 -8.70035 -6.78932 -0.59904 0.31135 0.35306 0.65896 1.23610 1.37537 1.52647 1.69870 1.76060 1.92848 2.05786 2.17990 2.55757 3.14730 3.17727 3.56731 3.80965 4.21966 4.26939 4.36439 4.54986 4.69743 4.73322 4.74920 4.99534 5.16188 5.18954 6.08461 6.29913 6.63567 6.66592 6.69779 8.22415 8.32803 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.037231 B = 0.005385 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.888332 B = 5198.411701 C = 5935.151847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.012 3.988 3 N -0.490 5.490 4 C 0.096 3.904 5 C 0.079 3.921 6 O 0.084 5.916 7 N -0.431 5.431 8 C 0.184 3.816 9 C -0.465 4.465 10 H 0.088 0.912 11 C 0.029 3.971 12 N -0.793 5.793 13 Si 0.996 3.004 14 H -0.258 1.258 15 H -0.261 1.261 16 H -0.259 1.259 17 C -0.223 4.223 18 C 0.335 3.665 19 N -0.472 5.472 20 C -0.264 4.264 21 S 0.304 5.696 22 H 0.100 0.900 23 H 0.117 0.883 24 H 0.074 0.926 25 H 0.291 0.709 26 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.596 -13.469 0.002 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.267 4.267 3 N -0.206 5.206 4 C -0.036 4.036 5 C 0.005 3.995 6 O 0.037 5.963 7 N -0.158 5.158 8 C 0.039 3.961 9 C -0.502 4.502 10 H 0.106 0.894 11 C -0.190 4.190 12 N -0.420 5.420 13 Si 0.815 3.185 14 H -0.183 1.183 15 H -0.185 1.185 16 H -0.182 1.182 17 C -0.233 4.233 18 C 0.023 3.977 19 N -0.152 5.152 20 C -0.406 4.406 21 S 0.561 5.439 22 H 0.118 0.882 23 H 0.136 0.864 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.085 -13.488 -0.002 16.262 hybrid contribution 0.918 1.925 -0.006 2.133 sum -8.166 -11.563 -0.007 14.156 Atomic orbital electron populations 1.20638 0.82561 1.05289 1.05185 1.27739 1.03840 0.91893 1.03180 1.66734 1.02979 1.33783 1.17152 1.17302 0.87873 0.89701 1.08717 1.21784 0.86293 0.91085 1.00370 1.84629 1.13486 1.30017 1.68165 1.74536 1.15522 0.90510 1.35211 1.21553 0.84202 0.95323 0.94975 1.19097 0.94085 0.89065 1.47907 0.89355 1.26890 0.95092 1.05344 0.91693 1.69877 1.02056 1.37674 1.32364 0.84989 0.78752 0.74941 0.79807 1.18289 1.18457 1.18229 1.18024 0.88672 0.91851 1.24787 1.23891 0.90703 0.91558 0.91574 1.80972 1.11048 1.10063 1.13156 1.26928 1.08629 0.96248 1.08807 1.82132 0.90954 1.07837 1.62967 0.88163 0.86423 0.90691 0.89789 0.77942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.46 71.24 0.74 -0.49 15 2 C 0.01 0.29 7.34 88.56 0.65 0.94 15 3 N -0.49 -17.35 9.72 -180.84 -1.76 -19.11 15 4 C 0.10 3.53 6.70 40.55 0.27 3.80 15 5 C 0.08 3.59 7.31 24.99 0.18 3.77 15 6 O 0.08 4.07 11.03 69.51 0.77 4.84 15 7 N -0.43 -24.18 10.39 -47.83 -0.50 -24.68 15 8 C 0.18 10.40 7.02 42.56 0.30 10.70 15 9 C -0.46 -26.03 9.43 23.52 0.22 -25.81 15 10 H 0.09 4.80 7.85 -2.91 -0.02 4.77 15 11 C 0.03 1.52 5.50 85.31 0.47 1.99 15 12 N -0.79 -43.01 12.04 21.84 0.26 -42.74 15 13 Si 1.00 38.96 29.56 68.60 2.03 40.99 15 14 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 15 H -0.26 -9.50 7.11 99.48 0.71 -8.80 15 16 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 17 C -0.22 -11.45 6.42 -19.03 -0.12 -11.58 15 18 C 0.33 16.76 14.95 88.33 1.32 18.08 15 19 N -0.47 -23.19 18.54 19.01 0.35 -22.84 15 20 C -0.26 -6.98 10.89 67.13 0.73 -6.25 15 21 S 0.30 5.31 22.92 -56.49 -1.29 4.01 15 22 H 0.10 1.34 8.14 -2.39 -0.02 1.32 15 23 H 0.12 0.99 8.14 -2.39 -0.02 0.97 15 24 H 0.07 1.45 8.14 -2.39 -0.02 1.44 15 25 H 0.29 14.12 8.29 -92.71 -0.77 13.35 15 26 H 0.20 4.53 8.06 -2.91 -0.02 4.51 15 Total: -1.00 -70.92 270.16 5.88 -65.05 By element: Atomic # 1 Polarization: -1.92 SS G_CDS: 1.25 Total: -0.67 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 4.77 Total: -4.84 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -1.64 Total: -109.37 kcal Atomic # 8 Polarization: 4.07 SS G_CDS: 0.77 Total: 4.84 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -1.29 Total: 4.01 kcal Total: -70.92 5.88 -65.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259794628.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.976 kcal (2) G-P(sol) polarization free energy of solvation -70.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds