Wall clock time and date at job start Mon Mar 30 2020 07:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86807 * 119.99635 * 2 1 4 4 H 1.48495 * 109.47304 * 274.98041 * 3 2 1 5 5 H 1.48498 * 109.47213 * 34.98087 * 3 2 1 6 6 H 1.48502 * 109.47193 * 154.97975 * 3 2 1 7 7 C 1.38805 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00119 * 185.97599 * 7 2 1 9 9 N 1.36758 * 120.00173 * 5.96640 * 7 2 1 10 10 N 1.39573 * 125.44688 * 354.02032 * 9 7 2 11 11 C 1.31953 * 109.34702 * 179.68049 * 10 9 7 12 12 C 1.47350 * 126.25211 * 180.20186 * 11 10 9 13 13 C 1.36197 * 126.61637 * 324.99401 * 12 11 10 14 14 N 1.33986 * 107.47726 * 179.97438 * 13 12 11 15 15 C 1.30444 * 108.95615 * 0.02562 * 14 13 12 16 16 O 1.34014 * 109.09978 * 359.75188 * 15 14 13 17 17 C 1.46588 * 107.49752 * 0.20093 * 11 10 9 18 18 S 1.75898 * 143.05817 * 180.02562 * 17 11 10 19 19 C 1.75634 * 91.28877 * 179.97438 * 18 17 11 20 20 C 1.32800 * 110.37341 * 0.02562 * 19 18 17 21 21 C 1.37717 * 107.26905 * 0.02562 * 17 11 10 22 22 H 0.96998 * 120.00838 * 0.02562 * 1 2 3 23 23 H 1.08000 * 126.26151 * 359.96778 * 13 12 11 24 24 H 1.07993 * 125.44980 * 180.02562 * 15 14 13 25 25 H 1.07999 * 124.81197 * 180.02562 * 19 18 17 26 26 H 1.08000 * 122.18913 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6179 0.0000 4 1 2.3905 2.1073 -1.3947 5 1 1.5023 2.6201 0.8027 6 1 3.5946 1.4123 0.5921 7 6 2.0085 -1.2020 -0.0005 8 1 3.0842 -1.2045 0.0968 9 7 1.3304 -2.3832 -0.1242 10 7 -0.0584 -2.5217 -0.1381 11 6 -0.3692 -3.7963 -0.2787 12 6 -1.7293 -4.3595 -0.3437 13 6 -2.8251 -3.9167 0.3331 14 7 -3.8546 -4.7028 -0.0097 15 6 -3.4378 -5.6002 -0.8597 16 8 -2.1312 -5.4121 -1.0906 17 6 0.8857 -4.5498 -0.3583 18 16 1.5428 -6.1718 -0.5351 19 6 3.1863 -5.5567 -0.4639 20 6 3.1800 -4.2367 -0.3182 21 6 1.9154 -3.6411 -0.2555 22 1 -0.4851 0.8400 -0.0004 23 1 -2.8582 -3.0843 1.0204 24 1 -4.0490 -6.3687 -1.3092 25 1 4.0759 -6.1655 -0.5292 26 1 4.0912 -3.6608 -0.2524 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259953874.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:55 Heat of formation + Delta-G solvation = 130.122600 kcal Electronic energy + Delta-G solvation = -16403.163958 eV Core-core repulsion = 13577.416686 eV Total energy + Delta-G solvation = -2825.747272 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.031 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.62045 -39.68763 -34.87590 -34.18622 -33.81685 -31.37158 -28.98409 -27.54330 -25.30861 -22.86290 -22.36769 -21.82813 -19.93295 -19.11435 -18.01591 -17.22192 -15.95944 -15.89872 -15.23825 -14.47349 -14.08123 -13.94754 -13.76690 -13.42383 -13.17997 -12.46813 -12.05455 -11.62284 -11.36195 -11.16274 -11.00740 -10.86493 -10.68576 -10.24359 -10.09969 -9.92460 -9.33860 -8.97681 -8.09999 -7.49437 -7.10899 -6.92877 -4.44748 1.76483 1.87447 2.40492 2.82329 2.86399 2.94971 2.97168 3.02438 3.16064 3.60948 3.64229 3.86964 4.25453 4.69302 4.72118 5.38749 5.61011 5.74328 5.90056 6.02168 6.23298 6.29775 6.52765 6.70937 6.80946 6.88785 7.09171 7.24645 7.60887 8.16878 8.22746 8.87671 9.10841 10.02072 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.017596 B = 0.008406 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.868628 B = 3330.027609 C = 4849.277514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.039 3.961 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.289 4.289 8 H 0.126 0.874 9 N -0.116 5.116 10 N -0.191 5.191 11 C 0.050 3.950 12 C 0.084 3.916 13 C -0.035 4.035 14 N -0.485 5.485 15 C 0.137 3.863 16 O -0.201 6.201 17 C -0.254 4.254 18 S 0.067 5.933 19 C -0.227 4.227 20 C -0.068 4.068 21 C -0.027 4.027 22 H 0.283 0.717 23 H 0.185 0.815 24 H 0.244 0.756 25 H 0.157 0.843 26 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.987 -5.284 -1.059 5.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.180 4.180 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.426 4.426 8 H 0.144 0.856 9 N 0.111 4.889 10 N -0.027 5.027 11 C -0.105 4.105 12 C 0.029 3.971 13 C -0.177 4.177 14 N -0.213 5.213 15 C -0.088 4.088 16 O -0.086 6.086 17 C -0.380 4.380 18 S 0.322 5.678 19 C -0.364 4.364 20 C -0.102 4.102 21 C -0.149 4.149 22 H 0.094 0.906 23 H 0.202 0.798 24 H 0.260 0.740 25 H 0.175 0.825 26 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.140 -5.420 -0.916 5.499 hybrid contribution 1.915 1.321 -0.218 2.336 sum 2.055 -4.099 -1.133 4.723 Atomic orbital electron populations 1.70227 1.06295 1.29145 1.32389 1.25763 0.95936 1.00755 0.95570 0.85642 0.79499 0.78974 0.79260 1.19244 1.19665 1.18395 1.20177 0.92866 0.80497 1.49039 0.85607 1.44804 1.02067 1.02925 1.39083 1.78326 0.89516 1.11395 1.23438 1.18985 0.85561 0.90530 1.15381 1.19979 0.93479 0.88758 0.94870 1.23222 0.87088 1.02569 1.04799 1.70215 1.32158 1.05577 1.13374 1.27808 0.79905 1.01592 0.99491 1.84489 1.27094 1.42871 1.54159 1.23658 0.95743 0.96054 1.22563 1.83192 0.97992 1.05613 1.81005 1.24822 0.99944 0.97420 1.14171 1.18794 0.95141 0.93702 1.02555 1.18690 0.93330 0.86244 1.16665 0.90612 0.79805 0.74030 0.82531 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.24 11.78 55.49 0.65 -18.59 15 2 C 0.04 0.92 5.49 -17.51 -0.10 0.83 15 3 Si 0.94 17.40 29.56 -169.99 -5.02 12.37 15 4 H -0.27 -4.91 7.11 56.52 0.40 -4.51 15 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 6 H -0.26 -4.57 7.11 56.52 0.40 -4.17 15 7 C -0.29 -7.13 10.20 -15.14 -0.15 -7.28 15 8 H 0.13 2.77 7.84 -52.48 -0.41 2.36 15 9 N -0.12 -3.06 3.77 -9.73 -0.04 -3.10 15 10 N -0.19 -5.20 10.29 34.44 0.35 -4.84 15 11 C 0.05 1.27 7.28 -80.74 -0.59 0.68 15 12 C 0.08 1.89 7.28 -36.61 -0.27 1.63 15 13 C -0.04 -0.74 11.87 -17.35 -0.21 -0.95 15 14 N -0.48 -9.16 11.26 -14.59 -0.16 -9.32 15 15 C 0.14 2.22 13.21 52.17 0.69 2.91 15 16 O -0.20 -3.99 10.80 4.01 0.04 -3.95 15 17 C -0.25 -6.09 7.48 -36.41 -0.27 -6.36 15 18 S 0.07 1.30 23.31 -107.50 -2.51 -1.21 15 19 C -0.23 -3.98 11.14 28.87 0.32 -3.66 15 20 C -0.07 -1.35 10.17 -40.82 -0.42 -1.77 15 21 C -0.03 -0.64 7.17 -84.00 -0.60 -1.24 15 22 H 0.28 6.55 8.31 -40.82 -0.34 6.21 15 23 H 0.18 3.74 8.06 -52.49 -0.42 3.31 15 24 H 0.24 2.40 8.06 -52.49 -0.42 1.97 15 25 H 0.16 2.12 8.06 -52.49 -0.42 1.70 15 26 H 0.13 2.20 8.06 -52.49 -0.42 1.78 15 LS Contribution 261.75 15.07 3.94 3.94 Total: -1.00 -30.26 261.75 -5.56 -35.82 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -1.24 Total: 4.09 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -1.59 Total: -15.22 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.81 Total: -35.86 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: 0.04 Total: -3.95 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.02 Total: 12.37 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.51 Total: -1.21 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.26 -5.56 -35.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259953874.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.942 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds