Wall clock time and date at job start Mon Mar 30 2020 07:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46901 * 109.47121 * 59.99793 * 9 7 2 12 12 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.38235 * 120.00477 * 264.72521 * 12 9 7 14 14 C 1.38221 * 120.00998 * 179.78989 * 13 12 9 15 15 C 1.50701 * 119.98547 * 180.20897 * 14 13 12 16 16 F 1.39907 * 109.47000 * 300.25193 * 15 14 13 17 17 F 1.39898 * 109.47169 * 60.25387 * 15 14 13 18 18 C 1.38261 * 120.02815 * 0.46248 * 14 13 12 19 19 C 1.38195 * 120.01311 * 359.78918 * 18 14 13 20 20 C 1.38329 * 120.00789 * 84.99773 * 12 9 7 21 21 Cl 1.73604 * 120.01149 * 0.02562 * 20 12 9 22 22 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 23 23 H 1.00901 * 110.99547 * 296.04468 * 11 9 7 24 24 H 1.00898 * 111.00245 * 59.99841 * 11 9 7 25 25 H 1.07999 * 119.99752 * 359.97438 * 13 12 9 26 26 H 1.09004 * 109.46889 * 180.25283 * 15 14 13 27 27 H 1.08001 * 119.99711 * 179.76871 * 18 14 13 28 28 H 1.07992 * 120.00772 * 179.97438 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 6 2.5959 -4.2416 -1.1915 14 6 3.4974 -5.2893 -1.1920 15 6 3.8991 -5.9366 -2.4923 16 9 2.7651 -6.4602 -3.1225 17 9 4.4958 -4.9825 -3.3234 18 6 4.0267 -5.7472 0.0003 19 6 3.6581 -5.1547 1.1931 20 6 2.7593 -4.1026 1.1938 21 17 2.2947 -3.3584 2.6919 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3004 -1.8577 -1.1910 24 1 0.9652 -2.5259 -2.0381 25 1 2.1794 -3.8873 -2.1228 26 1 4.6083 -6.7403 -2.2942 27 1 4.7282 -6.5684 -0.0003 28 1 4.0713 -5.5127 2.1244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259985781.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:11 Heat of formation + Delta-G solvation = -91.874044 kcal Electronic energy + Delta-G solvation = -17284.270633 eV Core-core repulsion = 13996.163972 eV Total energy + Delta-G solvation = -3288.106661 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.79851 -46.78932 -39.11662 -35.86723 -34.91990 -31.86055 -31.30137 -29.44125 -26.35884 -25.54601 -23.38830 -21.45519 -20.15454 -17.23426 -17.04609 -17.02115 -16.56379 -16.07222 -15.15156 -14.70259 -13.92039 -13.81752 -13.73850 -13.19853 -13.16555 -12.93398 -12.54690 -12.35238 -12.01717 -11.36895 -11.27899 -11.04908 -10.97461 -10.79745 -10.60286 -10.35315 -10.10884 -9.60109 -8.72564 -8.48810 -8.16487 -7.28698 -6.13003 -4.28478 1.35955 1.72812 2.73176 3.23436 3.28244 3.31608 3.89633 3.93143 4.29291 4.32635 4.72772 5.09217 5.17053 5.21429 5.22724 5.60336 5.81785 6.05830 6.27777 6.41692 6.45710 6.71436 6.83469 7.16001 7.57008 7.70610 8.00022 8.59210 8.85323 9.03045 9.42286 10.85967 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.007694 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.176824 B = 3638.447572 C = 4394.791098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.070 3.930 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.055 0.945 9 C 0.238 3.762 10 H 0.063 0.937 11 N -0.852 5.852 12 C -0.022 4.022 13 C -0.060 4.060 14 C -0.177 4.177 15 C 0.317 3.683 16 F -0.201 7.201 17 F -0.201 7.201 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.018 4.018 21 Cl -0.060 7.060 22 H 0.267 0.733 23 H 0.359 0.641 24 H 0.311 0.689 25 H 0.135 0.865 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.120 -10.674 -0.461 12.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.133 4.133 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.073 0.927 9 C 0.128 3.872 10 H 0.081 0.919 11 N -0.382 5.382 12 C -0.023 4.023 13 C -0.078 4.078 14 C -0.178 4.178 15 C 0.263 3.737 16 F -0.182 7.182 17 F -0.182 7.182 18 C -0.122 4.122 19 C -0.139 4.139 20 C -0.045 4.045 21 Cl -0.031 7.031 22 H 0.077 0.923 23 H 0.176 0.824 24 H 0.121 0.879 25 H 0.153 0.847 26 H 0.130 0.870 27 H 0.145 0.855 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.665 -11.188 -0.081 13.023 hybrid contribution 0.839 2.067 -0.108 2.233 sum 7.503 -9.121 -0.189 11.812 Atomic orbital electron populations 1.69720 1.05817 1.27410 1.50136 1.24956 0.94917 0.99203 0.94203 0.86574 0.79608 0.82582 0.78823 1.20179 1.21143 1.20069 1.21597 0.93437 0.90536 1.52264 0.92711 1.18100 0.89055 0.87573 0.92482 0.91904 1.59585 1.18460 1.56297 1.03882 1.20482 0.96014 0.95748 0.90054 1.20783 0.94556 0.93480 0.99007 1.20336 1.02695 1.00810 0.93972 1.20336 0.82652 0.87438 0.83263 1.93012 1.54193 1.86931 1.84067 1.93011 1.83751 1.67192 1.74284 1.20568 1.00457 1.00252 0.90970 1.20859 0.98369 0.96240 0.98456 1.20934 0.99374 0.96195 0.88017 1.98354 1.91208 1.82022 1.31486 0.92323 0.82408 0.87901 0.84692 0.86972 0.85473 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.18 11.54 55.43 0.64 -23.54 15 2 C 0.07 1.85 5.38 -17.82 -0.10 1.76 15 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 15 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.54 -14.15 8.71 -34.44 -0.30 -14.45 15 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 15 9 C 0.24 5.78 2.46 -70.02 -0.17 5.61 15 10 H 0.06 1.68 7.13 -51.93 -0.37 1.31 15 11 N -0.85 -20.00 8.78 -6.65 -0.06 -20.06 15 12 C -0.02 -0.46 5.00 -104.59 -0.52 -0.98 15 13 C -0.06 -1.14 8.82 -39.59 -0.35 -1.49 15 14 C -0.18 -2.78 5.37 -104.62 -0.56 -3.35 15 15 C 0.32 4.20 5.45 36.01 0.20 4.39 15 16 F -0.20 -2.99 17.25 2.25 0.04 -2.95 15 17 F -0.20 -3.05 17.26 2.25 0.04 -3.01 15 18 C -0.10 -1.43 9.67 -39.59 -0.38 -1.81 15 19 C -0.12 -1.85 9.83 -39.55 -0.39 -2.24 15 20 C -0.02 -0.34 6.31 -39.50 -0.25 -0.59 15 21 Cl -0.06 -1.14 27.40 -51.86 -1.42 -2.56 15 22 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 23 H 0.36 9.02 7.08 -39.29 -0.28 8.74 15 24 H 0.31 6.96 7.20 -39.29 -0.28 6.68 15 25 H 0.14 2.63 6.28 -52.49 -0.33 2.30 15 26 H 0.11 0.99 7.88 -51.93 -0.41 0.58 15 27 H 0.13 1.23 7.95 -52.49 -0.42 0.81 15 28 H 0.13 1.63 8.06 -52.49 -0.42 1.21 15 LS Contribution 267.72 15.07 4.03 4.03 Total: -1.00 -27.68 267.72 -6.63 -34.30 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -2.05 Total: 11.07 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -2.83 Total: -13.16 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.58 Total: -43.60 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.08 Total: -5.96 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.42 Total: -2.56 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.68 -6.63 -34.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259985781.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.572 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds