Wall clock time and date at job start Mon Mar 30 2020 07:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46901 * 109.47121 * 59.99793 * 9 7 2 12 12 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.38235 * 120.00477 * 264.72521 * 12 9 7 14 14 C 1.38221 * 120.00998 * 179.78989 * 13 12 9 15 15 C 1.50701 * 119.98547 * 180.20897 * 14 13 12 16 16 F 1.39907 * 109.47000 * 300.25193 * 15 14 13 17 17 F 1.39898 * 109.47169 * 60.25387 * 15 14 13 18 18 C 1.38261 * 120.02815 * 0.46248 * 14 13 12 19 19 C 1.38195 * 120.01311 * 359.78918 * 18 14 13 20 20 C 1.38329 * 120.00789 * 84.99773 * 12 9 7 21 21 Cl 1.73604 * 120.01149 * 0.02562 * 20 12 9 22 22 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 23 23 H 1.00901 * 110.99547 * 296.04468 * 11 9 7 24 24 H 1.00898 * 111.00245 * 59.99841 * 11 9 7 25 25 H 1.07999 * 119.99752 * 359.97438 * 13 12 9 26 26 H 1.09004 * 109.46889 * 180.25283 * 15 14 13 27 27 H 1.08001 * 119.99711 * 179.76871 * 18 14 13 28 28 H 1.07992 * 120.00772 * 179.97438 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 6 2.5959 -4.2416 -1.1915 14 6 3.4974 -5.2893 -1.1920 15 6 3.8991 -5.9366 -2.4923 16 9 2.7651 -6.4602 -3.1225 17 9 4.4958 -4.9825 -3.3234 18 6 4.0267 -5.7472 0.0003 19 6 3.6581 -5.1547 1.1931 20 6 2.7593 -4.1026 1.1938 21 17 2.2947 -3.3584 2.6919 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3004 -1.8577 -1.1910 24 1 0.9652 -2.5259 -2.0381 25 1 2.1794 -3.8873 -2.1228 26 1 4.6083 -6.7403 -2.2942 27 1 4.7282 -6.5684 -0.0003 28 1 4.0713 -5.5127 2.1244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259985781.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:10 Heat of formation + Delta-G solvation = -108.776244 kcal Electronic energy + Delta-G solvation = -17285.003568 eV Core-core repulsion = 13996.163972 eV Total energy + Delta-G solvation = -3288.839596 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.87713 -47.88612 -40.47997 -37.29129 -36.70621 -33.70451 -32.60447 -31.00984 -28.16995 -26.84312 -25.01459 -22.76304 -21.67588 -18.63602 -18.45604 -18.18380 -18.09865 -17.35668 -16.74950 -16.41513 -15.57731 -15.10736 -14.97787 -14.79729 -14.29209 -14.27059 -14.11622 -13.88706 -13.30858 -13.16901 -12.89015 -12.81585 -12.40712 -12.38826 -12.20059 -11.96680 -11.75949 -11.26385 -10.71400 -9.82099 -9.63907 -9.22503 -8.13571 -6.36835 0.03752 0.42017 1.32246 1.36431 1.37289 1.44972 2.34180 2.62474 2.87035 3.05518 3.33170 3.66687 3.94519 4.07145 4.16318 4.23882 4.54215 4.66893 4.74750 4.94000 5.15944 5.21750 5.36853 5.62190 5.73874 5.82223 6.03416 6.61209 6.86906 7.04910 7.36907 8.82195 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.007694 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.176824 B = 3638.447572 C = 4394.791098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.027 3.973 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.042 0.958 9 C 0.243 3.757 10 H 0.029 0.971 11 N -0.845 5.845 12 C -0.060 4.060 13 C -0.080 4.080 14 C -0.178 4.178 15 C 0.314 3.686 16 F -0.213 7.213 17 F -0.215 7.215 18 C -0.078 4.078 19 C -0.114 4.114 20 C -0.037 4.037 21 Cl -0.073 7.073 22 H 0.267 0.733 23 H 0.348 0.652 24 H 0.316 0.684 25 H 0.118 0.882 26 H 0.175 0.825 27 H 0.187 0.813 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.484 -12.568 -0.475 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.174 4.174 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.061 0.939 9 C 0.133 3.867 10 H 0.047 0.953 11 N -0.374 5.374 12 C -0.061 4.061 13 C -0.099 4.099 14 C -0.179 4.179 15 C 0.262 3.738 16 F -0.195 7.195 17 F -0.197 7.197 18 C -0.096 4.096 19 C -0.133 4.133 20 C -0.064 4.064 21 Cl -0.044 7.044 22 H 0.077 0.923 23 H 0.163 0.837 24 H 0.126 0.874 25 H 0.136 0.864 26 H 0.192 0.808 27 H 0.204 0.796 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.036 -13.094 -0.101 15.910 hybrid contribution 0.136 2.560 -0.107 2.566 sum 9.172 -10.534 -0.209 13.970 Atomic orbital electron populations 1.69819 1.06798 1.27960 1.50795 1.25631 0.95660 1.01982 0.94090 0.85706 0.78524 0.79334 0.78664 1.19876 1.20604 1.20021 1.21774 0.92889 0.91969 1.51936 0.93940 1.17829 0.89114 0.88650 0.91094 0.95277 1.59560 1.18249 1.55490 1.04140 1.20236 0.97409 0.96410 0.92028 1.20740 0.96321 0.95284 0.97557 1.20723 1.01279 0.99461 0.96472 1.20903 0.83201 0.88303 0.81437 1.92990 1.55321 1.86953 1.84199 1.92986 1.83856 1.68183 1.74629 1.21208 0.99247 1.00122 0.89029 1.21316 0.96669 0.94479 1.00802 1.21190 1.00701 0.97637 0.86848 1.98340 1.91541 1.82571 1.31979 0.92333 0.83744 0.87408 0.86400 0.80819 0.79576 0.81788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.92 11.54 21.45 0.25 -50.67 15 2 C 0.03 1.45 5.38 84.65 0.46 1.90 15 3 Si 0.95 43.41 29.54 68.60 2.03 45.44 15 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 15 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 6 H -0.27 -12.42 7.11 99.48 0.71 -11.72 15 7 C -0.55 -29.56 8.71 25.60 0.22 -29.34 15 8 H 0.04 2.35 7.74 -2.91 -0.02 2.32 15 9 C 0.24 12.30 2.46 43.42 0.11 12.40 15 10 H 0.03 1.65 7.13 -2.39 -0.02 1.63 15 11 N -0.85 -41.46 8.78 -174.95 -1.54 -43.00 15 12 C -0.06 -2.56 5.00 -19.84 -0.10 -2.66 15 13 C -0.08 -3.06 8.82 22.27 0.20 -2.86 15 14 C -0.18 -5.05 5.37 -19.86 -0.11 -5.16 15 15 C 0.31 7.12 5.45 71.24 0.39 7.51 15 16 F -0.21 -5.84 17.25 44.97 0.78 -5.06 15 17 F -0.22 -6.00 17.26 44.97 0.78 -5.22 15 18 C -0.08 -1.75 9.67 22.26 0.22 -1.53 15 19 C -0.11 -3.09 9.83 22.29 0.22 -2.87 15 20 C -0.04 -1.37 6.31 22.32 0.14 -1.23 15 21 Cl -0.07 -2.82 27.40 -2.72 -0.07 -2.89 15 22 H 0.27 14.24 8.31 -92.71 -0.77 13.47 15 23 H 0.35 18.26 7.08 -89.69 -0.63 17.63 15 24 H 0.32 14.79 7.20 -89.70 -0.65 14.14 15 25 H 0.12 4.74 6.28 -2.91 -0.02 4.72 15 26 H 0.18 1.89 7.88 -2.38 -0.02 1.88 15 27 H 0.19 2.02 7.95 -2.91 -0.02 2.00 15 28 H 0.16 3.31 8.06 -2.91 -0.02 3.28 15 Total: -1.00 -63.10 267.72 3.90 -59.20 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.05 Total: 26.05 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 1.74 Total: -23.84 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -1.29 Total: -93.67 kcal Atomic # 9 Polarization: -11.84 SS G_CDS: 1.55 Total: -10.28 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 17 Polarization: -2.82 SS G_CDS: -0.07 Total: -2.89 kcal Total: -63.10 3.90 -59.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259985781.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.573 kcal (2) G-P(sol) polarization free energy of solvation -63.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds