Wall clock time and date at job start Mon Mar 30 2020 07:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99659 * 2 1 4 4 H 1.48506 * 109.46598 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47087 * 299.99676 * 3 2 1 6 6 H 1.48500 * 109.47332 * 59.99958 * 3 2 1 7 7 C 1.37874 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99930 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47029 * 60.00410 * 9 7 2 11 11 N 1.46897 * 109.47122 * 299.99925 * 9 7 2 12 12 C 1.50703 * 109.47008 * 180.02562 * 9 7 2 13 13 C 1.38233 * 120.00745 * 99.97706 * 12 9 7 14 14 C 1.38217 * 120.01835 * 180.02562 * 13 12 9 15 15 C 1.50700 * 119.99095 * 180.02562 * 14 13 12 16 16 F 1.39900 * 109.46981 * 209.99546 * 15 14 13 17 17 F 1.39891 * 109.47103 * 329.99969 * 15 14 13 18 18 C 1.38268 * 120.02090 * 359.78924 * 14 13 12 19 19 C 1.38190 * 120.01570 * 0.46925 * 18 14 13 20 20 C 1.38326 * 120.00517 * 280.00295 * 12 9 7 21 21 Cl 1.73597 * 120.01847 * 359.95355 * 20 12 9 22 22 H 0.97000 * 120.00070 * 359.97438 * 1 2 3 23 23 H 1.00897 * 111.00754 * 300.00103 * 11 9 7 24 24 H 1.00901 * 111.00060 * 63.96172 * 11 9 7 25 25 H 1.08002 * 119.99253 * 0.02562 * 13 12 9 26 26 H 1.09002 * 109.46617 * 90.00087 * 15 14 13 27 27 H 1.08004 * 119.99472 * 180.25449 * 18 14 13 28 28 H 1.08002 * 120.01169 * 179.79334 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4070 -2.5772 1.1992 12 6 2.2304 -3.6446 -0.0005 13 6 2.5220 -4.3048 1.1784 14 6 3.4205 -5.3550 1.1788 15 6 3.7375 -6.0747 2.4643 16 9 5.0478 -6.5626 2.4147 17 9 3.6104 -5.1880 3.5387 18 6 4.0249 -5.7487 -0.0009 19 6 3.7383 -5.0861 -1.1792 20 6 2.8380 -4.0351 -1.1802 21 17 2.4720 -3.2069 -2.6613 22 1 -0.4850 0.8400 0.0004 23 1 0.9652 -2.5260 2.0381 24 1 -0.3005 -1.8578 1.1911 25 1 2.0476 -3.9999 2.0995 26 1 3.0450 -6.9062 2.5954 27 1 4.7239 -6.5721 -0.0008 28 1 4.2130 -5.3915 -2.0999 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259985784.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:18 Heat of formation + Delta-G solvation = -91.766865 kcal Electronic energy + Delta-G solvation = -17271.580367 eV Core-core repulsion = 13983.478353 eV Total energy + Delta-G solvation = -3288.102014 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.86291 -46.87885 -39.08928 -35.82516 -34.90347 -31.81837 -31.33104 -29.38704 -26.32277 -25.60584 -23.31871 -21.48329 -20.04017 -17.34860 -17.28340 -16.97525 -16.58237 -15.88637 -15.14671 -14.73679 -14.02970 -13.88786 -13.60501 -13.28549 -13.18905 -12.81816 -12.49044 -12.29543 -12.22882 -11.34278 -11.29705 -11.00796 -10.96211 -10.77619 -10.59851 -10.32926 -10.06029 -9.60796 -8.74035 -8.45162 -8.12059 -7.30719 -6.13718 -4.28243 1.38578 1.75246 2.76892 3.20388 3.29404 3.34480 3.84199 3.98897 4.32899 4.34402 4.74746 5.04107 5.09463 5.25293 5.28784 5.63238 5.86950 6.07907 6.32335 6.42415 6.48890 6.73122 6.85005 7.18006 7.55683 7.71227 7.99547 8.58468 8.84846 9.01204 9.42409 10.85575 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.007398 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.825653 B = 3783.775626 C = 4505.042500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.069 3.931 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.056 0.944 9 C 0.238 3.762 10 H 0.063 0.937 11 N -0.852 5.852 12 C -0.022 4.022 13 C -0.069 4.069 14 C -0.176 4.176 15 C 0.317 3.683 16 F -0.205 7.205 17 F -0.199 7.199 18 C -0.105 4.105 19 C -0.119 4.119 20 C -0.020 4.020 21 Cl -0.060 7.060 22 H 0.265 0.735 23 H 0.312 0.688 24 H 0.359 0.641 25 H 0.140 0.860 26 H 0.119 0.881 27 H 0.129 0.871 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.215 -10.824 0.990 12.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.074 0.926 9 C 0.128 3.872 10 H 0.080 0.920 11 N -0.383 5.383 12 C -0.024 4.024 13 C -0.087 4.087 14 C -0.177 4.177 15 C 0.263 3.737 16 F -0.186 7.186 17 F -0.180 7.180 18 C -0.123 4.123 19 C -0.138 4.138 20 C -0.047 4.047 21 Cl -0.030 7.030 22 H 0.075 0.925 23 H 0.121 0.879 24 H 0.176 0.824 25 H 0.158 0.842 26 H 0.136 0.864 27 H 0.146 0.854 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.823 -11.335 0.599 12.333 hybrid contribution 0.983 2.085 0.061 2.305 sum 5.806 -9.251 0.660 10.942 Atomic orbital electron populations 1.69736 1.05801 1.27157 1.50487 1.24950 0.94908 0.99205 0.94271 0.86475 0.80248 0.83295 0.77674 1.19692 1.20825 1.20937 1.21661 0.93511 0.90465 1.51777 0.92607 1.18081 0.89043 0.87667 0.92372 0.91983 1.59583 1.18478 1.56284 1.03940 1.20467 0.95951 0.95858 0.90105 1.20769 0.95595 0.93206 0.99155 1.20401 1.02437 1.00605 0.94289 1.20269 0.80882 0.89380 0.83131 1.92964 1.40453 1.88502 1.96692 1.92997 1.95840 1.71298 1.57857 1.20571 0.99999 1.00499 0.91222 1.20879 0.98509 0.95848 0.98587 1.20931 0.99530 0.95725 0.88498 1.98354 1.93620 1.78152 1.32920 0.92471 0.87853 0.82399 0.84187 0.86405 0.85359 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.99 11.54 55.43 0.64 -23.35 15 2 C 0.07 1.82 5.38 -17.82 -0.10 1.72 15 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 15 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.53 -13.92 8.49 -34.44 -0.29 -14.21 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.24 5.70 2.41 -70.02 -0.17 5.53 15 10 H 0.06 1.64 7.36 -51.93 -0.38 1.26 15 11 N -0.85 -19.41 8.66 -6.65 -0.06 -19.47 15 12 C -0.02 -0.47 5.03 -104.59 -0.53 -0.99 15 13 C -0.07 -1.27 8.60 -39.59 -0.34 -1.61 15 14 C -0.18 -2.76 5.73 -104.62 -0.60 -3.36 15 15 C 0.32 4.14 5.65 36.01 0.20 4.34 15 16 F -0.20 -2.78 16.49 2.25 0.04 -2.74 15 17 F -0.20 -2.98 16.48 2.25 0.04 -2.95 15 18 C -0.10 -1.53 9.40 -39.59 -0.37 -1.91 15 19 C -0.12 -1.89 9.83 -39.55 -0.39 -2.28 15 20 C -0.02 -0.38 6.30 -39.50 -0.25 -0.62 15 21 Cl -0.06 -1.14 27.33 -51.86 -1.42 -2.56 15 22 H 0.27 6.84 8.31 -40.82 -0.34 6.50 15 23 H 0.31 6.74 7.28 -39.29 -0.29 6.46 15 24 H 0.36 8.82 7.08 -39.29 -0.28 8.54 15 25 H 0.14 2.55 5.79 -52.49 -0.30 2.25 15 26 H 0.12 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.13 1.53 7.61 -52.48 -0.40 1.13 15 28 H 0.13 1.70 8.06 -52.49 -0.42 1.28 15 LS Contribution 265.55 15.07 4.00 4.00 Total: -1.00 -27.07 265.55 -6.65 -33.72 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -2.04 Total: 10.89 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -2.83 Total: -13.39 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.58 Total: -42.82 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.07 Total: -5.69 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.42 Total: -2.56 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.07 -6.65 -33.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259985784.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.047 kcal (2) G-P(sol) polarization free energy of solvation -27.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds