Wall clock time and date at job start Mon Mar 30 2020 07:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 S 1.72050 * 127.24677 * 59.68566 * 12 2 1 14 14 N 1.69602 * 95.71243 * 179.90886 * 13 12 2 15 15 C 1.30090 * 107.16492 * 0.35398 * 14 13 12 16 16 C 1.35174 * 127.24657 * 239.99730 * 12 2 1 17 17 Br 1.89102 * 122.62777 * 359.97438 * 16 12 2 18 18 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 19 19 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 21 21 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 22 22 H 1.07993 * 121.56511 * 179.75679 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 6 2.0323 -0.7104 1.2306 13 16 1.7275 -2.3403 1.6893 14 7 2.6336 -2.2847 3.1219 15 6 3.1201 -1.0824 3.2221 16 6 2.8122 -0.1993 2.2092 17 35 3.4331 1.5868 2.1900 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 0.7173 1.1669 -3.4844 22 1 3.7366 -0.7899 4.0592 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259987958.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:17 Heat of formation + Delta-G solvation = 27.892529 kcal Electronic energy + Delta-G solvation = -10417.437794 eV Core-core repulsion = 8338.104207 eV Total energy + Delta-G solvation = -2079.333587 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.39265 -34.80786 -31.94813 -30.58610 -28.18621 -25.34198 -24.31722 -21.19303 -19.01039 -17.40677 -16.12947 -15.26127 -14.48073 -13.91413 -13.31173 -12.88325 -12.42268 -11.68945 -11.32222 -10.99913 -10.96288 -10.69234 -10.54659 -10.22423 -10.08852 -10.01308 -9.69005 -9.26776 -8.55188 -8.50024 -8.08255 -6.17458 -4.26652 1.24923 1.60889 2.24129 2.72541 2.81235 3.25034 3.29515 3.32874 4.30887 5.08759 5.16780 5.57133 5.95732 6.22439 6.63344 6.79146 6.89281 6.94056 7.46401 7.66509 7.85424 8.10147 8.73232 9.39220 10.88362 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.024456 B = 0.009911 C = 0.008076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.643945 B = 2824.504621 C = 3466.111448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.095 3.905 3 H 0.066 0.934 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.070 3.930 7 N -0.884 5.884 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.275 1.275 12 C -0.056 4.056 13 S 0.277 5.723 14 N -0.492 5.492 15 C 0.116 3.884 16 C -0.224 4.224 17 Br -0.024 7.024 18 H 0.096 0.904 19 H 0.032 0.968 20 H 0.015 0.985 21 H 0.265 0.735 22 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.668 0.648 8.448 8.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.075 3.925 3 H 0.083 0.917 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.187 4.187 13 S 0.428 5.572 14 N -0.311 5.311 15 C -0.083 4.083 16 C -0.318 4.318 17 Br 0.059 6.941 18 H 0.114 0.886 19 H 0.052 0.948 20 H 0.034 0.966 21 H 0.075 0.925 22 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.156 -0.713 8.485 8.784 hybrid contribution 0.963 0.996 -0.759 1.580 sum 3.119 0.283 7.726 8.337 Atomic orbital electron populations 1.21871 0.96289 0.99909 1.01305 1.17807 0.93330 0.96234 0.85159 0.91673 1.20945 1.32675 1.12812 0.89352 0.92204 1.24886 0.94634 0.94829 0.98940 1.69850 1.35828 1.22355 1.24064 0.86558 0.79412 0.79803 0.81781 1.19958 1.21053 1.20041 1.26571 0.93959 0.99180 0.99039 1.84045 1.48276 1.09628 1.15285 1.76723 1.17888 1.21137 1.15379 1.22471 0.98590 0.88670 0.98562 1.21915 1.12753 0.96040 1.01139 1.96559 1.87700 1.10984 1.98897 0.88577 0.94847 0.96624 0.92474 0.80535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.92 37.16 0.33 -2.74 14 2 C 0.10 2.26 2.65 -92.92 -0.25 2.01 14 3 H 0.07 1.65 6.97 -51.93 -0.36 1.29 14 4 C -0.52 -13.43 8.50 -34.44 -0.29 -13.72 14 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 14 6 C 0.07 1.83 5.31 -17.82 -0.09 1.73 14 7 N -0.88 -23.70 11.33 55.43 0.63 -23.07 14 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.37 14 9 H -0.27 -6.17 7.11 56.52 0.40 -5.76 14 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 14 11 H -0.27 -6.26 7.11 56.52 0.40 -5.85 14 12 C -0.06 -1.17 5.08 -35.40 -0.18 -1.35 14 13 S 0.28 5.29 23.59 -107.50 -2.54 2.75 14 14 N -0.49 -8.99 12.09 28.89 0.35 -8.64 14 15 C 0.12 1.98 11.13 -18.43 -0.21 1.77 14 16 C -0.22 -4.23 6.20 -40.81 -0.25 -4.48 14 17 Br -0.02 -0.40 32.70 -68.01 -2.22 -2.63 14 18 H 0.10 2.38 6.08 -51.93 -0.32 2.07 14 19 H 0.03 0.72 8.10 -51.93 -0.42 0.30 14 20 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 14 21 H 0.27 6.81 8.31 -40.82 -0.34 6.47 14 22 H 0.18 2.38 8.06 -52.49 -0.42 1.96 14 LS Contribution 231.75 15.07 3.49 3.49 Total: -1.00 -26.30 231.75 -7.74 -34.04 By element: Atomic # 1 Polarization: -3.04 SS G_CDS: -1.48 Total: -4.53 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.94 Total: -16.79 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.98 Total: -31.72 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 5.29 SS G_CDS: -2.54 Total: 2.75 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -2.22 Total: -2.63 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -26.30 -7.74 -34.04 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259987958.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.931 kcal (2) G-P(sol) polarization free energy of solvation -26.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds