Wall clock time and date at job start Mon Mar 30 2020 07:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47395 * 305.00741 * 10 9 7 12 12 N 1.46904 * 109.46673 * 65.00262 * 10 9 7 13 13 C 1.50699 * 109.47053 * 185.00135 * 10 9 7 14 14 C 1.38248 * 119.97177 * 265.00100 * 13 10 9 15 15 C 1.38207 * 120.07888 * 179.97438 * 14 13 10 16 16 C 1.38433 * 120.02388 * 359.97438 * 15 14 13 17 17 F 1.35099 * 120.02738 * 179.97438 * 16 15 14 18 18 C 1.38617 * 119.94487 * 0.02562 * 16 15 14 19 19 F 1.35096 * 120.03930 * 180.02562 * 18 16 15 20 20 C 1.38321 * 119.96653 * 84.72821 * 13 10 9 21 21 Cl 1.73591 * 120.01521 * 359.97438 * 20 13 10 22 22 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 25 25 H 1.00896 * 111.00022 * 296.04480 * 12 10 9 26 26 H 1.00898 * 110.99974 * 60.00104 * 12 10 9 27 27 H 1.07994 * 119.96166 * 0.02562 * 14 13 10 28 28 H 1.07997 * 119.98992 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9296 -3.5551 -0.8422 12 7 3.0084 -3.6538 1.2548 13 6 1.4960 -4.9637 -0.1244 14 6 1.1638 -5.6800 1.0104 15 6 0.4762 -6.8737 0.8994 16 6 0.1185 -7.3535 -0.3489 17 9 -0.5533 -8.5206 -0.4575 18 6 0.4511 -6.6361 -1.4873 19 9 0.1025 -7.1023 -2.7065 20 6 1.1363 -5.4377 -1.3731 21 17 1.5473 -4.5333 -2.7967 22 1 -0.4851 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8896 25 1 3.5701 -2.8191 1.3311 26 1 2.3961 -3.7517 2.0507 27 1 1.4413 -5.3060 1.9848 28 1 0.2177 -7.4324 1.7868 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259990879.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:31 Heat of formation + Delta-G solvation = -81.164662 kcal Electronic energy + Delta-G solvation = -17115.781271 eV Core-core repulsion = 13828.139003 eV Total energy + Delta-G solvation = -3287.642268 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 3.87 seconds Orbital eigenvalues (eV) -49.41057 -48.48641 -39.32790 -36.29927 -35.46050 -32.56358 -30.69518 -29.70330 -28.10037 -24.79491 -23.14086 -22.45380 -20.13323 -18.08262 -17.34345 -16.89447 -16.52921 -16.29696 -15.34362 -14.93027 -14.70366 -14.68779 -14.15572 -13.87750 -13.34720 -13.16591 -12.46988 -12.35930 -12.26848 -11.81396 -11.45034 -11.19601 -11.04861 -10.81568 -10.58055 -10.36502 -10.02775 -9.27503 -8.74628 -8.61376 -8.48768 -7.88805 -6.14232 -4.19166 0.91699 0.97950 2.15826 3.23572 3.30891 3.31902 3.37420 3.78154 4.33282 4.35494 4.60976 4.78121 5.07051 5.20627 5.37868 5.47484 5.69539 5.83736 6.06737 6.13709 6.48122 6.54505 6.70531 7.35257 7.44350 7.76884 7.86103 8.05552 8.20686 8.86432 9.46361 10.96410 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.029876 B = 0.005917 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.966761 B = 4731.113914 C = 5126.934098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.002 3.998 10 C 0.121 3.879 11 H 0.092 0.908 12 N -0.839 5.839 13 C -0.023 4.023 14 C -0.080 4.080 15 C -0.121 4.121 16 C 0.059 3.941 17 F -0.130 7.130 18 C 0.074 3.926 19 F -0.122 7.122 20 C -0.050 4.050 21 Cl -0.028 7.028 22 H 0.262 0.738 23 H 0.027 0.973 24 H 0.018 0.982 25 H 0.353 0.647 26 H 0.329 0.671 27 H 0.150 0.850 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 -11.947 0.998 12.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.036 4.036 10 C 0.009 3.991 11 H 0.110 0.890 12 N -0.369 5.369 13 C -0.024 4.024 14 C -0.099 4.099 15 C -0.140 4.140 16 C 0.038 3.962 17 F -0.109 7.109 18 C 0.053 3.947 19 F -0.100 7.100 20 C -0.079 4.079 21 Cl 0.002 6.998 22 H 0.072 0.928 23 H 0.046 0.954 24 H 0.036 0.964 25 H 0.167 0.833 26 H 0.141 0.859 27 H 0.168 0.832 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.937 -12.459 0.525 12.620 hybrid contribution -0.459 1.602 -0.259 1.686 sum 1.478 -10.857 0.267 10.961 Atomic orbital electron populations 1.69957 1.06101 1.26880 1.49785 1.24988 0.94808 0.99287 0.94935 0.86587 0.79805 0.83349 0.78232 1.20603 1.21234 1.19757 1.21070 0.92866 0.90514 1.51952 0.92404 1.19792 0.94263 0.91232 0.98335 1.20677 0.95204 0.89336 0.93863 0.89024 1.59293 1.27724 1.46404 1.03484 1.20113 0.95428 0.97061 0.89820 1.20898 0.96512 0.93094 0.99397 1.21130 0.99695 0.97647 0.95525 1.17373 1.00821 0.84897 0.93091 1.91509 1.77882 1.44635 1.96831 1.17251 1.02917 0.94299 0.80262 1.91529 1.90106 1.88016 1.40370 1.20613 1.03496 0.93096 0.90660 1.98404 1.91762 1.73065 1.36609 0.92807 0.95420 0.96359 0.83285 0.85868 0.83245 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 13.29 55.43 0.74 -24.68 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 7 C -0.53 -13.50 8.55 -34.44 -0.29 -13.79 15 8 H 0.06 1.43 7.15 -52.48 -0.38 1.05 15 9 C 0.00 0.05 4.60 -27.88 -0.13 -0.08 15 10 C 0.12 2.26 2.49 -68.86 -0.17 2.09 15 11 H 0.09 1.81 7.13 -51.93 -0.37 1.44 15 12 N -0.84 -13.84 8.79 -5.65 -0.05 -13.89 15 13 C -0.02 -0.38 5.06 -104.59 -0.53 -0.91 15 14 C -0.08 -1.12 9.26 -39.59 -0.37 -1.49 15 15 C -0.12 -1.52 10.02 -39.52 -0.40 -1.92 15 16 C 0.06 0.85 7.31 -39.37 -0.29 0.56 15 17 F -0.13 -1.87 17.18 2.25 0.04 -1.83 15 18 C 0.07 1.19 7.28 -39.34 -0.29 0.90 15 19 F -0.12 -2.00 16.75 2.25 0.04 -1.96 15 20 C -0.05 -0.86 6.32 -39.45 -0.25 -1.11 15 21 Cl -0.03 -0.48 26.83 -51.86 -1.39 -1.88 15 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 23 H 0.03 0.71 7.90 -51.93 -0.41 0.30 15 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 15 25 H 0.35 6.03 7.90 -39.29 -0.31 5.72 15 26 H 0.33 4.96 7.21 -39.29 -0.28 4.68 15 27 H 0.15 1.80 6.28 -52.49 -0.33 1.47 15 28 H 0.15 1.37 8.06 -52.49 -0.42 0.95 15 LS Contribution 268.14 15.07 4.04 4.04 Total: -1.00 -27.87 268.14 -6.47 -34.34 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -2.06 Total: 4.43 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -2.81 Total: -14.16 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.69 Total: -38.57 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.08 Total: -3.79 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.39 Total: -1.88 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.87 -6.47 -34.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259990879.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.821 kcal (2) G-P(sol) polarization free energy of solvation -27.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.87 seconds