Wall clock time and date at job start Mon Mar 30 2020 07:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 N 1.46904 * 109.47449 * 295.00105 * 10 9 7 13 13 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 14 14 C 1.38254 * 119.97189 * 99.71819 * 13 10 9 15 15 C 1.38205 * 120.07519 * 179.77178 * 14 13 10 16 16 C 1.38435 * 120.02861 * 0.51278 * 15 14 13 17 17 F 1.35100 * 120.02975 * 179.72167 * 16 15 14 18 18 C 1.38607 * 119.93971 * 359.74793 * 16 15 14 19 19 F 1.35100 * 120.04051 * 179.97438 * 18 16 15 20 20 C 1.38323 * 119.96954 * 280.00522 * 13 10 9 21 21 Cl 1.73602 * 120.01178 * 359.97438 * 20 13 10 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.00898 * 111.00551 * 176.04613 * 12 10 9 26 26 H 1.00898 * 110.99372 * 300.00401 * 12 10 9 27 27 H 1.07995 * 119.95641 * 0.02562 * 14 13 10 28 28 H 1.08003 * 119.98636 * 180.23792 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 7 3.0083 -3.6540 -1.2547 13 6 1.4958 -4.9637 0.1244 14 6 1.2490 -5.7284 -1.0007 15 6 0.5661 -6.9247 -0.8889 16 6 0.1188 -7.3541 0.3488 17 9 -0.5536 -8.5208 0.4573 18 6 0.3610 -6.5855 1.4766 19 9 -0.0751 -7.0023 2.6855 20 6 1.0503 -5.3894 1.3628 21 17 1.3549 -4.4250 2.7738 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 3.7159 -4.3732 -1.2524 26 1 2.3959 -3.7518 -2.0507 27 1 1.5939 -5.3924 -1.9674 28 1 0.3775 -7.5228 -1.7682 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259990880.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:39 Heat of formation + Delta-G solvation = -75.100110 kcal Electronic energy + Delta-G solvation = -17127.968220 eV Core-core repulsion = 13840.588931 eV Total energy + Delta-G solvation = -3287.379289 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.50494 -48.57932 -39.48817 -36.35760 -35.39337 -32.49835 -30.83234 -29.59675 -28.35813 -24.68865 -23.21509 -22.43793 -20.11034 -18.14399 -17.39248 -16.94734 -16.45565 -16.27737 -15.31700 -15.01741 -14.92109 -14.65698 -14.39800 -14.23159 -13.77456 -13.00875 -12.52829 -12.46338 -11.99563 -11.64142 -11.49218 -11.16915 -10.95153 -10.59707 -10.58471 -10.32133 -9.70509 -9.13476 -8.84664 -8.48256 -8.32690 -8.19550 -5.94399 -3.93336 0.78512 0.84471 2.09732 3.21612 3.37131 3.43244 3.47292 3.68331 4.25639 4.49769 4.53877 4.63725 4.90198 5.18160 5.33569 5.44145 5.57312 5.74628 5.86461 5.97631 6.23196 6.53928 6.68641 7.44205 7.59696 7.83673 7.98053 8.05569 8.45803 9.11983 9.68687 11.17354 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.029977 B = 0.005966 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.817977 B = 4692.473914 C = 5110.801181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.052 3.948 3 Si 0.893 3.107 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.494 4.494 8 H 0.063 0.937 9 C 0.037 3.963 10 C 0.129 3.871 11 H 0.093 0.907 12 N -0.819 5.819 13 C -0.070 4.070 14 C -0.101 4.101 15 C -0.116 4.116 16 C 0.059 3.941 17 F -0.129 7.129 18 C 0.077 3.923 19 F -0.120 7.120 20 C -0.046 4.046 21 Cl -0.022 7.022 22 H 0.259 0.741 23 H 0.030 0.970 24 H 0.016 0.984 25 H 0.325 0.675 26 H 0.336 0.664 27 H 0.146 0.854 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 -14.278 -0.614 14.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.532 4.532 8 H 0.081 0.919 9 C 0.000 4.000 10 C 0.017 3.983 11 H 0.111 0.889 12 N -0.347 5.347 13 C -0.073 4.073 14 C -0.120 4.120 15 C -0.135 4.135 16 C 0.039 3.961 17 F -0.107 7.107 18 C 0.056 3.944 19 F -0.099 7.099 20 C -0.075 4.075 21 Cl 0.008 6.992 22 H 0.068 0.932 23 H 0.048 0.952 24 H 0.035 0.965 25 H 0.137 0.863 26 H 0.151 0.849 27 H 0.163 0.837 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.176 -13.365 -0.226 13.543 hybrid contribution -0.334 -0.330 0.233 0.524 sum 1.842 -13.694 0.007 13.818 Atomic orbital electron populations 1.69963 1.06001 1.26445 1.51689 1.24996 0.94790 0.99148 0.95826 0.86583 0.79785 0.83569 0.77955 1.20848 1.21570 1.19944 1.21078 0.93347 0.89772 1.49021 0.91861 1.19176 0.92732 0.90269 0.97840 1.21037 0.95243 0.88992 0.93009 0.88877 1.58767 1.17687 1.54449 1.03759 1.21479 0.96731 0.99019 0.90081 1.20916 0.98765 0.93316 0.98996 1.21087 0.99008 0.97780 0.95666 1.17373 1.00729 0.84657 0.93364 1.91518 1.77845 1.44591 1.96770 1.17356 1.01794 0.94517 0.80774 1.91540 1.87431 1.89701 1.41197 1.20665 1.02956 0.92515 0.91356 1.98421 1.93981 1.69460 1.37361 0.93184 0.95230 0.96530 0.86294 0.84928 0.83680 0.83409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.29 55.43 0.74 -25.84 15 2 C 0.05 1.47 5.46 -17.82 -0.10 1.37 15 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 15 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 15 6 H -0.27 -6.55 7.11 56.52 0.40 -6.14 15 7 C -0.49 -13.35 8.84 -34.44 -0.30 -13.65 15 8 H 0.06 1.71 7.74 -52.49 -0.41 1.30 15 9 C 0.04 0.89 4.54 -27.88 -0.13 0.76 15 10 C 0.13 2.39 2.37 -68.86 -0.16 2.22 15 11 H 0.09 1.80 7.35 -51.92 -0.38 1.42 15 12 N -0.82 -13.23 8.43 -5.65 -0.05 -13.28 15 13 C -0.07 -1.11 5.08 -104.59 -0.53 -1.64 15 14 C -0.10 -1.29 9.25 -39.59 -0.37 -1.66 15 15 C -0.12 -1.36 10.02 -39.52 -0.40 -1.76 15 16 C 0.06 0.82 7.31 -39.37 -0.29 0.53 15 17 F -0.13 -1.78 17.18 2.25 0.04 -1.74 15 18 C 0.08 1.20 7.28 -39.34 -0.29 0.91 15 19 F -0.12 -1.92 16.75 2.25 0.04 -1.89 15 20 C -0.05 -0.76 6.31 -39.45 -0.25 -1.01 15 21 Cl -0.02 -0.37 26.31 -51.86 -1.36 -1.74 15 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 23 H 0.03 0.76 7.30 -51.93 -0.38 0.38 15 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 25 H 0.33 4.22 9.06 -39.29 -0.36 3.86 15 26 H 0.34 4.99 7.28 -39.29 -0.29 4.71 15 27 H 0.15 1.52 6.24 -52.49 -0.33 1.19 15 28 H 0.15 1.26 8.06 -52.48 -0.42 0.84 15 LS Contribution 268.76 15.07 4.05 4.05 Total: -1.00 -29.72 268.76 -6.49 -36.21 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -2.12 Total: 1.52 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -2.81 Total: -13.92 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.69 Total: -39.13 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.08 Total: -3.63 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.36 Total: -1.74 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.72 -6.49 -36.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259990880.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.887 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds