Wall clock time and date at job start Mon Mar 30 2020 07:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 N 1.46904 * 109.47449 * 295.00105 * 10 9 7 13 13 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 14 14 C 1.38254 * 119.97189 * 99.71819 * 13 10 9 15 15 C 1.38205 * 120.07519 * 179.77178 * 14 13 10 16 16 C 1.38435 * 120.02861 * 0.51278 * 15 14 13 17 17 F 1.35100 * 120.02975 * 179.72167 * 16 15 14 18 18 C 1.38607 * 119.93971 * 359.74793 * 16 15 14 19 19 F 1.35100 * 120.04051 * 179.97438 * 18 16 15 20 20 C 1.38323 * 119.96954 * 280.00522 * 13 10 9 21 21 Cl 1.73602 * 120.01178 * 359.97438 * 20 13 10 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.00898 * 111.00551 * 176.04613 * 12 10 9 26 26 H 1.00898 * 110.99372 * 300.00401 * 12 10 9 27 27 H 1.07995 * 119.95641 * 0.02562 * 14 13 10 28 28 H 1.08003 * 119.98636 * 180.23792 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 7 3.0083 -3.6540 -1.2547 13 6 1.4958 -4.9637 0.1244 14 6 1.2490 -5.7284 -1.0007 15 6 0.5661 -6.9247 -0.8889 16 6 0.1188 -7.3541 0.3488 17 9 -0.5536 -8.5208 0.4573 18 6 0.3610 -6.5855 1.4766 19 9 -0.0751 -7.0023 2.6855 20 6 1.0503 -5.3894 1.3628 21 17 1.3549 -4.4250 2.7738 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 3.7159 -4.3732 -1.2524 26 1 2.3959 -3.7518 -2.0507 27 1 1.5939 -5.3924 -1.9674 28 1 0.3775 -7.5228 -1.7682 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259990880.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:38 Heat of formation + Delta-G solvation = -93.739477 kcal Electronic energy + Delta-G solvation = -17128.776484 eV Core-core repulsion = 13840.588931 eV Total energy + Delta-G solvation = -3288.187553 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = -0.76 seconds Orbital eigenvalues (eV) -50.65871 -49.73427 -40.68442 -37.63657 -36.85301 -34.49960 -31.97217 -30.79600 -30.16971 -26.36065 -24.33389 -24.00971 -21.58716 -19.30360 -18.58203 -18.48409 -17.94969 -17.56188 -16.84505 -16.35946 -16.17098 -16.08353 -15.79809 -15.39814 -15.11187 -14.44813 -14.06457 -13.88461 -13.51363 -13.17239 -12.89725 -12.68888 -12.56336 -12.36841 -12.10540 -12.00634 -11.50298 -11.15583 -10.46366 -10.00099 -9.75102 -9.49153 -8.08128 -6.12712 -0.33578 -0.29796 0.85557 1.45465 1.45740 1.56362 2.09821 2.49462 2.54754 3.14301 3.26470 3.39298 3.54793 3.78621 3.96323 4.21410 4.41841 4.57572 4.67007 4.80893 4.87400 5.12524 5.47696 5.55130 5.71388 5.90728 6.31981 6.49461 6.85789 7.01023 7.53311 9.03650 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.029977 B = 0.005966 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.817977 B = 4692.473914 C = 5110.801181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.002 4.002 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.044 3.956 10 C 0.146 3.854 11 H 0.080 0.920 12 N -0.826 5.826 13 C -0.085 4.085 14 C -0.088 4.088 15 C -0.094 4.094 16 C 0.062 3.938 17 F -0.127 7.127 18 C 0.060 3.940 19 F -0.129 7.129 20 C -0.060 4.060 21 Cl -0.042 7.042 22 H 0.258 0.742 23 H 0.004 0.996 24 H -0.005 1.005 25 H 0.347 0.653 26 H 0.346 0.654 27 H 0.174 0.826 28 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.929 -15.345 -2.287 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.199 4.199 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.538 4.538 8 H 0.080 0.920 9 C 0.006 3.994 10 C 0.033 3.967 11 H 0.098 0.902 12 N -0.357 5.357 13 C -0.089 4.089 14 C -0.106 4.106 15 C -0.113 4.113 16 C 0.042 3.958 17 F -0.105 7.105 18 C 0.039 3.961 19 F -0.107 7.107 20 C -0.089 4.089 21 Cl -0.013 7.013 22 H 0.067 0.933 23 H 0.022 0.978 24 H 0.013 0.987 25 H 0.162 0.838 26 H 0.161 0.839 27 H 0.192 0.808 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.020 -14.455 -1.904 14.889 hybrid contribution -0.606 -0.093 0.713 0.940 sum 2.415 -14.547 -1.190 14.794 Atomic orbital electron populations 1.70089 1.07499 1.27126 1.53235 1.25802 0.95546 1.02675 0.95845 0.85603 0.78664 0.79508 0.78160 1.20117 1.21620 1.19156 1.21447 0.93437 0.91221 1.47717 0.92043 1.18960 0.93175 0.91773 0.95466 1.20431 0.94024 0.88425 0.93782 0.90196 1.58610 1.18172 1.55924 1.02985 1.21267 0.97855 0.98734 0.91045 1.21235 0.97542 0.92920 0.98912 1.21502 0.96580 0.97149 0.96036 1.17571 1.00321 0.84370 0.93535 1.91530 1.77779 1.44431 1.96794 1.17532 1.02569 0.94826 0.81216 1.91513 1.87606 1.89743 1.41842 1.20780 1.04105 0.92942 0.91055 1.98405 1.94197 1.70113 1.38575 0.93319 0.97800 0.98667 0.83835 0.83899 0.80840 0.79082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.25 13.29 21.45 0.28 -55.96 15 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 15 3 Si 0.95 44.49 29.54 68.60 2.03 46.52 15 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 15 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 7 C -0.50 -27.18 8.84 25.60 0.23 -26.96 15 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 15 9 C 0.04 2.12 4.54 29.85 0.14 2.26 15 10 C 0.15 5.31 2.37 44.17 0.10 5.42 15 11 H 0.08 3.10 7.35 -2.38 -0.02 3.09 15 12 N -0.83 -25.07 8.43 -171.79 -1.45 -26.52 15 13 C -0.09 -2.61 5.08 -19.84 -0.10 -2.71 15 14 C -0.09 -1.94 9.25 22.27 0.21 -1.74 15 15 C -0.09 -1.81 10.02 22.31 0.22 -1.59 15 16 C 0.06 1.57 7.31 22.40 0.16 1.73 15 17 F -0.13 -3.18 17.18 44.97 0.77 -2.41 15 18 C 0.06 1.81 7.28 22.43 0.16 1.97 15 19 F -0.13 -4.12 16.75 44.97 0.75 -3.36 15 20 C -0.06 -1.98 6.31 22.36 0.14 -1.83 15 21 Cl -0.04 -1.50 26.31 -2.72 -0.07 -1.57 15 22 H 0.26 14.77 8.31 -92.71 -0.77 14.00 15 23 H 0.00 0.20 7.30 -2.39 -0.02 0.18 15 24 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 15 25 H 0.35 8.05 9.06 -89.70 -0.81 7.23 15 26 H 0.35 9.38 7.28 -89.70 -0.65 8.72 15 27 H 0.17 2.85 6.24 -2.91 -0.02 2.83 15 28 H 0.19 2.09 8.06 -2.91 -0.02 2.07 15 Total: -1.00 -64.91 268.76 3.81 -61.10 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -0.23 Total: 5.32 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 1.73 Total: -23.12 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -1.16 Total: -82.48 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 1.53 Total: -5.77 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.07 Total: -1.57 kcal Total: -64.91 3.81 -61.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259990880.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.640 kcal (2) G-P(sol) polarization free energy of solvation -64.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.76 seconds