Wall clock time and date at job start Mon Mar 30 2020 07:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99555 * 2 1 4 4 H 1.48493 * 109.46844 * 270.00066 * 3 2 1 5 5 H 1.48501 * 109.47198 * 30.00071 * 3 2 1 6 6 H 1.48502 * 109.46957 * 149.99973 * 3 2 1 7 7 C 1.37871 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47072 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47310 * 305.00453 * 10 9 7 12 12 N 1.46905 * 109.47027 * 65.00245 * 10 9 7 13 13 C 1.50703 * 109.47072 * 185.00098 * 10 9 7 14 14 C 1.38234 * 119.97987 * 265.00029 * 13 10 9 15 15 C 1.38440 * 120.03072 * 179.97438 * 14 13 10 16 16 F 1.35100 * 119.99811 * 179.97438 * 15 14 13 17 17 C 1.38457 * 120.00158 * 0.02562 * 15 14 13 18 18 C 1.38373 * 119.95841 * 359.97438 * 17 15 14 19 19 F 1.35108 * 120.01577 * 179.97438 * 18 17 15 20 20 C 1.38278 * 119.97623 * 84.72907 * 13 10 9 21 21 Cl 1.73597 * 120.00440 * 359.97438 * 20 13 10 22 22 H 0.96999 * 120.00227 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46854 * 60.00360 * 9 7 2 24 24 H 1.09002 * 109.47338 * 300.00068 * 9 7 2 25 25 H 1.00901 * 110.99869 * 296.04819 * 12 10 9 26 26 H 1.00896 * 110.99543 * 59.99942 * 12 10 9 27 27 H 1.07997 * 119.98224 * 0.02562 * 14 13 10 28 28 H 1.07990 * 120.01945 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 1 2.9296 -3.5558 -0.8391 12 7 3.0085 -3.6526 1.2580 13 6 1.4961 -4.9637 -0.1200 14 6 1.1639 -5.6792 1.0152 15 6 0.4751 -6.8749 0.9038 16 9 0.1512 -7.5738 2.0136 17 6 0.1191 -7.3549 -0.3451 18 6 0.4517 -6.6386 -1.4814 19 9 0.1053 -7.1063 -2.7007 20 6 1.1364 -5.4389 -1.3677 21 17 1.5474 -4.5358 -2.7922 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5575 -0.8880 24 1 0.6248 -2.5563 0.8920 25 1 3.5701 -2.8178 1.3336 26 1 2.3962 -3.7498 2.0540 27 1 1.4411 -5.3047 1.9895 28 1 -0.4179 -8.2878 -0.4324 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259998932.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:42 Heat of formation + Delta-G solvation = -98.611772 kcal Electronic energy + Delta-G solvation = -17095.362992 eV Core-core repulsion = 13806.964160 eV Total energy + Delta-G solvation = -3288.398831 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -50.15764 -50.08395 -40.54138 -37.54514 -37.03692 -34.53777 -31.55593 -31.30126 -29.88530 -26.67076 -24.23924 -23.93973 -21.68793 -19.22492 -18.59726 -18.34022 -17.87238 -17.18090 -17.04274 -16.59277 -16.43337 -16.05111 -15.50523 -15.29089 -14.70781 -14.39674 -14.05280 -13.82712 -13.75945 -13.34865 -12.96801 -12.85044 -12.53959 -12.31357 -12.22509 -11.88336 -11.87543 -11.18461 -10.59375 -10.08705 -9.73570 -9.41704 -8.20154 -6.30836 -0.32434 -0.16781 0.95915 1.41323 1.42585 1.52220 2.11989 2.40407 2.61795 3.08712 3.14864 3.36643 3.72569 3.78350 4.06135 4.31636 4.44303 4.53778 4.66249 4.76389 4.87067 5.06262 5.41302 5.51226 5.56790 5.76475 6.15827 6.31406 6.66837 6.84526 7.38823 8.91097 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.006390 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.139927 B = 4380.975943 C = 5034.211937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.531 4.531 8 H 0.067 0.933 9 C 0.012 3.988 10 C 0.135 3.865 11 H 0.085 0.915 12 N -0.827 5.827 13 C -0.007 4.007 14 C -0.141 4.141 15 C 0.138 3.862 16 F -0.124 7.124 17 C -0.177 4.177 18 C 0.134 3.866 19 F -0.122 7.122 20 C -0.099 4.099 21 Cl -0.047 7.047 22 H 0.262 0.738 23 H 0.000 1.000 24 H -0.005 1.005 25 H 0.352 0.648 26 H 0.338 0.662 27 H 0.162 0.838 28 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 -13.444 0.407 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.783 3.217 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.182 1.182 7 C -0.569 4.569 8 H 0.085 0.915 9 C -0.026 4.026 10 C 0.023 3.977 11 H 0.103 0.897 12 N -0.357 5.357 13 C -0.009 4.009 14 C -0.160 4.160 15 C 0.119 3.881 16 F -0.102 7.102 17 C -0.197 4.197 18 C 0.114 3.886 19 F -0.100 7.100 20 C -0.127 4.127 21 Cl -0.018 7.018 22 H 0.071 0.929 23 H 0.018 0.982 24 H 0.014 0.986 25 H 0.166 0.834 26 H 0.151 0.849 27 H 0.179 0.821 28 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.194 -13.956 -0.002 14.127 hybrid contribution -0.615 1.891 -0.155 1.994 sum 1.579 -12.065 -0.157 12.169 Atomic orbital electron populations 1.70094 1.07781 1.27616 1.51498 1.25841 0.95526 1.02962 0.94816 0.85550 0.78966 0.79006 0.78150 1.20519 1.21358 1.18196 1.21483 0.93483 0.91408 1.50520 0.91489 1.19630 0.94444 0.92768 0.95803 1.20331 0.94066 0.88756 0.94569 0.89716 1.59283 1.27305 1.46056 1.03038 1.19622 0.95009 0.96017 0.90212 1.21095 1.00301 0.94222 1.00431 1.17205 0.97597 0.90827 0.82496 1.91548 1.90468 1.77779 1.50393 1.21087 1.05922 1.03850 0.88811 1.16922 0.98487 0.91990 0.81247 1.91547 1.89866 1.87825 1.40765 1.20997 1.06633 0.95109 0.89984 1.98386 1.92154 1.74006 1.37219 0.92948 0.98190 0.98626 0.83421 0.84921 0.82086 0.79750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 13.29 21.44 0.28 -54.09 15 2 C 0.01 0.38 5.46 84.65 0.46 0.84 15 3 Si 0.96 42.36 29.54 68.60 2.03 44.39 15 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 15 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 7 C -0.53 -27.51 8.55 25.60 0.22 -27.29 15 8 H 0.07 3.28 7.14 -2.91 -0.02 3.26 15 9 C 0.01 0.59 4.60 29.85 0.14 0.72 15 10 C 0.13 5.13 2.49 44.17 0.11 5.24 15 11 H 0.08 3.38 7.13 -2.39 -0.02 3.36 15 12 N -0.83 -27.40 8.79 -171.79 -1.51 -28.91 15 13 C -0.01 -0.24 5.06 -19.85 -0.10 -0.34 15 14 C -0.14 -4.06 9.25 22.32 0.21 -3.85 15 15 C 0.14 3.49 7.30 22.37 0.16 3.65 15 16 F -0.12 -2.92 17.27 44.97 0.78 -2.15 15 17 C -0.18 -4.15 10.01 22.35 0.22 -3.92 15 18 C 0.13 3.78 7.27 22.39 0.16 3.95 15 19 F -0.12 -3.38 16.84 44.97 0.76 -2.62 15 20 C -0.10 -3.27 6.32 22.37 0.14 -3.13 15 21 Cl -0.05 -1.63 26.82 -2.72 -0.07 -1.70 15 22 H 0.26 14.56 8.31 -92.71 -0.77 13.79 15 23 H 0.00 -0.02 7.90 -2.39 -0.02 -0.03 15 24 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 15 25 H 0.35 11.92 7.90 -89.69 -0.71 11.21 15 26 H 0.34 10.36 7.21 -89.70 -0.65 9.72 15 27 H 0.16 4.21 6.29 -2.91 -0.02 4.19 15 28 H 0.19 3.06 8.06 -2.92 -0.02 3.04 15 Total: -1.00 -58.32 268.25 3.86 -54.46 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -0.12 Total: 14.76 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 1.73 Total: -24.13 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -1.23 Total: -83.00 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 1.53 Total: -4.77 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.70 kcal Total: -58.32 3.86 -54.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998932.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.156 kcal (2) G-P(sol) polarization free energy of solvation -58.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds