Wall clock time and date at job start Mon Mar 30 2020 07:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.46976 * 54.99550 * 10 9 7 12 12 N 1.46900 * 109.46648 * 294.99361 * 10 9 7 13 13 C 1.50696 * 109.46626 * 174.99629 * 10 9 7 14 14 C 1.38240 * 119.97912 * 99.72929 * 13 10 9 15 15 C 1.38444 * 120.02865 * 179.72588 * 14 13 10 16 16 F 1.35109 * 119.99501 * 180.26936 * 15 14 13 17 17 C 1.38440 * 120.00322 * 0.51716 * 15 14 13 18 18 C 1.38375 * 119.96232 * 359.75511 * 17 15 14 19 19 F 1.35103 * 120.01758 * 180.02562 * 18 17 15 20 20 C 1.38280 * 119.98426 * 279.99408 * 13 10 9 21 21 Cl 1.73601 * 119.99761 * 0.02562 * 20 13 10 22 22 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 24 24 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 25 25 H 1.00907 * 110.99730 * 176.04632 * 12 10 9 26 26 H 1.00901 * 111.00161 * 300.00008 * 12 10 9 27 27 H 1.07995 * 119.98358 * 359.97438 * 14 13 10 28 28 H 1.08004 * 120.02219 * 179.77577 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 1 2.9326 -3.5570 0.8273 12 7 3.0036 -3.6511 -1.2703 13 6 1.4964 -4.9639 0.1117 14 6 1.2455 -5.7262 -1.0139 15 6 0.5625 -6.9251 -0.9006 16 9 0.3224 -7.6723 -2.0004 17 6 0.1210 -7.3558 0.3388 18 6 0.3673 -6.5899 1.4647 19 9 -0.0626 -7.0095 2.6748 20 6 1.0557 -5.3925 1.3503 21 17 1.3647 -4.4307 2.7621 22 1 -0.4850 -0.8400 0.0004 23 1 0.6281 -2.5591 0.8866 24 1 0.6207 -2.5548 -0.8933 25 1 3.7114 -4.3703 -1.2722 26 1 2.3883 -3.7472 -2.0642 27 1 1.5860 -5.3883 -1.9815 28 1 -0.4150 -8.2893 0.4271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259998935.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:47 Heat of formation + Delta-G solvation = -79.944438 kcal Electronic energy + Delta-G solvation = -17147.066990 eV Core-core repulsion = 13859.477635 eV Total energy + Delta-G solvation = -3287.589355 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.18364 -49.14207 -39.51389 -36.37460 -35.60824 -32.77190 -30.41658 -30.11266 -28.09787 -24.69528 -22.88869 -22.60669 -20.42727 -17.95388 -17.52297 -16.89357 -16.76308 -16.16904 -15.95784 -15.48639 -15.16318 -14.54741 -14.33290 -13.92968 -13.63396 -13.00978 -12.80221 -12.49029 -12.11555 -11.88849 -11.45387 -11.23666 -10.94298 -10.69693 -10.44223 -10.18158 -9.99844 -9.00360 -8.67190 -8.54172 -8.28657 -8.22002 -6.27125 -3.94082 0.67801 0.80117 2.10135 3.10514 3.49964 3.52155 3.61927 3.70516 4.10550 4.35648 4.61828 4.62956 4.86879 5.06114 5.34360 5.49600 5.53108 5.61243 5.72567 5.79595 6.07511 6.43019 6.53652 7.17898 7.31443 7.67559 7.89159 8.26186 8.59635 8.96133 9.74632 11.12934 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.024397 B = 0.006449 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.409528 B = 4340.407330 C = 5005.691125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 1.069 2.931 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.574 4.574 8 H 0.057 0.943 9 C 0.025 3.975 10 C 0.137 3.863 11 H 0.097 0.903 12 N -0.817 5.817 13 C -0.036 4.036 14 C -0.164 4.164 15 C 0.138 3.862 16 F -0.130 7.130 17 C -0.197 4.197 18 C 0.141 3.859 19 F -0.121 7.121 20 C -0.083 4.083 21 Cl -0.027 7.027 22 H 0.265 0.735 23 H 0.021 0.979 24 H 0.007 0.993 25 H 0.327 0.673 26 H 0.336 0.664 27 H 0.147 0.853 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.110 -14.969 0.554 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.192 4.192 3 Si 0.898 3.102 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.613 4.613 8 H 0.075 0.925 9 C -0.012 4.012 10 C 0.024 3.976 11 H 0.115 0.885 12 N -0.345 5.345 13 C -0.040 4.040 14 C -0.183 4.183 15 C 0.118 3.882 16 F -0.108 7.108 17 C -0.217 4.217 18 C 0.121 3.879 19 F -0.099 7.099 20 C -0.112 4.112 21 Cl 0.002 6.998 22 H 0.076 0.924 23 H 0.039 0.961 24 H 0.025 0.975 25 H 0.139 0.861 26 H 0.151 0.849 27 H 0.165 0.835 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.156 -12.509 0.884 12.725 hybrid contribution -0.428 -2.965 -0.023 2.996 sum 1.728 -15.474 0.860 15.594 Atomic orbital electron populations 1.70798 1.06912 1.30294 1.47564 1.25787 0.96509 1.02616 0.94253 0.83538 0.74804 0.75418 0.76459 1.21092 1.21609 1.21492 1.21858 0.94625 0.90705 1.54103 0.92484 1.19283 0.93342 0.92015 0.96573 1.20903 0.95082 0.88305 0.93274 0.88499 1.58743 1.17648 1.54506 1.03586 1.21243 0.94943 0.98200 0.89574 1.21013 1.02889 0.94100 1.00329 1.17233 0.98196 0.90344 0.82407 1.91536 1.92381 1.75458 1.51419 1.20833 1.07323 1.03241 0.90306 1.16986 0.97343 0.92619 0.80982 1.91553 1.87375 1.89601 1.41419 1.20887 1.05301 0.93835 0.91186 1.98416 1.94100 1.69961 1.37286 0.92426 0.96132 0.97504 0.86117 0.84927 0.83499 0.82899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.94 13.65 55.43 0.76 -27.18 15 2 C 0.01 0.31 5.46 -17.82 -0.10 0.21 15 3 Si 1.07 25.47 29.90 -169.99 -5.08 20.39 15 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 7 C -0.57 -15.79 8.84 -34.44 -0.30 -16.09 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.02 0.60 3.86 -27.88 -0.11 0.50 15 10 C 0.14 2.59 2.38 -68.87 -0.16 2.42 15 11 H 0.10 1.92 7.35 -51.93 -0.38 1.54 15 12 N -0.82 -13.85 8.43 -5.66 -0.05 -13.90 15 13 C -0.04 -0.58 5.08 -104.61 -0.53 -1.11 15 14 C -0.16 -2.28 9.23 -39.50 -0.36 -2.65 15 15 C 0.14 1.79 7.30 -39.43 -0.29 1.50 15 16 F -0.13 -1.62 17.27 2.25 0.04 -1.58 15 17 C -0.20 -2.45 10.00 -39.46 -0.39 -2.84 15 18 C 0.14 2.02 7.27 -39.40 -0.29 1.73 15 19 F -0.12 -1.72 16.84 2.25 0.04 -1.68 15 20 C -0.08 -1.34 6.31 -39.44 -0.25 -1.59 15 21 Cl -0.03 -0.46 26.30 -51.86 -1.36 -1.82 15 22 H 0.27 8.05 7.22 -40.82 -0.29 7.76 15 23 H 0.02 0.52 7.16 -51.93 -0.37 0.15 15 24 H 0.01 0.17 8.00 -51.93 -0.42 -0.24 15 25 H 0.33 4.50 9.06 -39.29 -0.36 4.14 15 26 H 0.34 5.34 7.28 -39.29 -0.29 5.05 15 27 H 0.15 1.82 6.24 -52.49 -0.33 1.49 15 28 H 0.15 1.50 8.06 -52.48 -0.42 1.08 15 LS Contribution 267.56 15.07 4.03 4.03 Total: -1.00 -29.90 267.56 -6.47 -36.38 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -2.06 Total: 3.30 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -2.79 Total: -17.93 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.71 Total: -41.08 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.08 Total: -3.26 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.36 Total: -1.82 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.90 -6.47 -36.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998935.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.569 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds