Wall clock time and date at job start Mon Mar 30 2020 07:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.46976 * 54.99550 * 10 9 7 12 12 N 1.46900 * 109.46648 * 294.99361 * 10 9 7 13 13 C 1.50696 * 109.46626 * 174.99629 * 10 9 7 14 14 C 1.38240 * 119.97912 * 99.72929 * 13 10 9 15 15 C 1.38444 * 120.02865 * 179.72588 * 14 13 10 16 16 F 1.35109 * 119.99501 * 180.26936 * 15 14 13 17 17 C 1.38440 * 120.00322 * 0.51716 * 15 14 13 18 18 C 1.38375 * 119.96232 * 359.75511 * 17 15 14 19 19 F 1.35103 * 120.01758 * 180.02562 * 18 17 15 20 20 C 1.38280 * 119.98426 * 279.99408 * 13 10 9 21 21 Cl 1.73601 * 119.99761 * 0.02562 * 20 13 10 22 22 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 24 24 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 25 25 H 1.00907 * 110.99730 * 176.04632 * 12 10 9 26 26 H 1.00901 * 111.00161 * 300.00008 * 12 10 9 27 27 H 1.07995 * 119.98358 * 359.97438 * 14 13 10 28 28 H 1.08004 * 120.02219 * 179.77577 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 1 2.9326 -3.5570 0.8273 12 7 3.0036 -3.6511 -1.2703 13 6 1.4964 -4.9639 0.1117 14 6 1.2455 -5.7262 -1.0139 15 6 0.5625 -6.9251 -0.9006 16 9 0.3224 -7.6723 -2.0004 17 6 0.1210 -7.3558 0.3388 18 6 0.3673 -6.5899 1.4647 19 9 -0.0626 -7.0095 2.6748 20 6 1.0557 -5.3925 1.3503 21 17 1.3647 -4.4307 2.7621 22 1 -0.4850 -0.8400 0.0004 23 1 0.6281 -2.5591 0.8866 24 1 0.6207 -2.5548 -0.8933 25 1 3.7114 -4.3703 -1.2722 26 1 2.3883 -3.7472 -2.0642 27 1 1.5860 -5.3883 -1.9815 28 1 -0.4150 -8.2893 0.4271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259998935.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:45 Heat of formation + Delta-G solvation = -98.496415 kcal Electronic energy + Delta-G solvation = -17147.871464 eV Core-core repulsion = 13859.477635 eV Total energy + Delta-G solvation = -3288.393829 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.26331 -50.20442 -40.73816 -37.64881 -37.10856 -34.77559 -31.60667 -31.31515 -29.88941 -26.35322 -24.34986 -24.01656 -21.90183 -19.19514 -18.81504 -18.63213 -17.97674 -17.29465 -17.13364 -16.57929 -16.53375 -15.81060 -15.61595 -15.55212 -15.35683 -14.39911 -14.23742 -13.78769 -13.60386 -13.45862 -12.96106 -12.77803 -12.54274 -12.23224 -12.06826 -11.92644 -11.77969 -10.71062 -10.44749 -10.11856 -9.81735 -9.64530 -8.54083 -6.20675 -0.46228 -0.33032 0.86378 1.57269 1.65438 1.83877 1.96179 2.50108 2.64459 2.97617 3.22820 3.28143 3.55622 3.70436 3.80020 4.19641 4.31933 4.36980 4.48696 4.58873 4.69043 4.89210 5.22601 5.37520 5.45692 6.08780 6.28551 6.36054 6.65573 6.75308 7.56066 8.86644 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.024397 B = 0.006449 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.409528 B = 4340.407330 C = 5005.691125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.043 4.043 3 Si 1.113 2.887 4 H -0.290 1.290 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.577 4.577 8 H 0.053 0.947 9 C 0.030 3.970 10 C 0.152 3.848 11 H 0.085 0.915 12 N -0.825 5.825 13 C -0.052 4.052 14 C -0.157 4.157 15 C 0.145 3.855 16 F -0.122 7.122 17 C -0.176 4.176 18 C 0.137 3.863 19 F -0.121 7.121 20 C -0.097 4.097 21 Cl -0.045 7.045 22 H 0.252 0.748 23 H 0.002 0.998 24 H -0.013 1.013 25 H 0.348 0.652 26 H 0.343 0.657 27 H 0.162 0.838 28 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 -16.324 -0.180 16.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.239 4.239 3 Si 0.936 3.064 4 H -0.215 1.215 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.616 4.616 8 H 0.071 0.929 9 C -0.007 4.007 10 C 0.039 3.961 11 H 0.103 0.897 12 N -0.356 5.356 13 C -0.055 4.055 14 C -0.176 4.176 15 C 0.125 3.875 16 F -0.100 7.100 17 C -0.195 4.195 18 C 0.116 3.884 19 F -0.099 7.099 20 C -0.125 4.125 21 Cl -0.016 7.016 22 H 0.061 0.939 23 H 0.020 0.980 24 H 0.005 0.995 25 H 0.162 0.838 26 H 0.158 0.842 27 H 0.180 0.820 28 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.789 -13.903 0.146 14.180 hybrid contribution -0.635 -2.666 0.168 2.746 sum 2.154 -16.569 0.314 16.711 Atomic orbital electron populations 1.70929 1.07962 1.29514 1.50196 1.27178 0.96564 1.06451 0.93712 0.82969 0.74047 0.71637 0.77765 1.21543 1.19837 1.19674 1.22212 0.94639 0.92209 1.52499 0.92853 1.19100 0.93780 0.93244 0.94609 1.20333 0.93932 0.87976 0.93847 0.89720 1.58614 1.18160 1.55902 1.02950 1.20851 0.96388 0.97774 0.90515 1.21125 1.02235 0.94108 1.00115 1.17152 0.97645 0.89904 0.82796 1.91567 1.92214 1.75125 1.51084 1.21130 1.05629 1.03625 0.89127 1.17021 0.97423 0.92291 0.81634 1.91557 1.87337 1.89476 1.41539 1.21054 1.06284 0.94548 0.90630 1.98404 1.94299 1.70656 1.38269 0.93853 0.97959 0.99457 0.83797 0.84193 0.82028 0.79626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.76 13.65 21.45 0.29 -58.46 15 2 C -0.04 -2.47 5.46 84.65 0.46 -2.01 15 3 Si 1.11 51.08 29.90 68.60 2.05 53.13 15 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 15 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 15 7 C -0.58 -32.01 8.84 25.60 0.23 -31.79 15 8 H 0.05 2.95 7.74 -2.91 -0.02 2.92 15 9 C 0.03 1.47 3.86 29.85 0.12 1.59 15 10 C 0.15 5.72 2.38 44.17 0.10 5.82 15 11 H 0.08 3.37 7.35 -2.39 -0.02 3.36 15 12 N -0.83 -27.07 8.43 -171.81 -1.45 -28.51 15 13 C -0.05 -1.63 5.08 -19.86 -0.10 -1.73 15 14 C -0.16 -4.02 9.23 22.32 0.21 -3.82 15 15 C 0.14 3.30 7.30 22.37 0.16 3.46 15 16 F -0.12 -2.61 17.27 44.97 0.78 -1.83 15 17 C -0.18 -3.78 10.00 22.35 0.22 -3.56 15 18 C 0.14 3.66 7.27 22.39 0.16 3.82 15 19 F -0.12 -3.23 16.84 44.97 0.76 -2.47 15 20 C -0.10 -3.05 6.31 22.36 0.14 -2.91 15 21 Cl -0.05 -1.56 26.30 -2.72 -0.07 -1.63 15 22 H 0.25 15.82 7.22 -92.71 -0.67 15.15 15 23 H 0.00 0.12 7.16 -2.39 -0.02 0.10 15 24 H -0.01 -0.68 8.00 -2.39 -0.02 -0.70 15 25 H 0.35 8.94 9.06 -89.69 -0.81 8.13 15 26 H 0.34 10.44 7.28 -89.69 -0.65 9.78 15 27 H 0.16 3.61 6.24 -2.91 -0.02 3.59 15 28 H 0.19 2.78 8.06 -2.91 -0.02 2.76 15 Total: -1.00 -64.35 267.56 3.93 -60.42 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -0.13 Total: 10.49 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 1.70 Total: -31.13 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -1.16 Total: -86.98 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 1.53 Total: -4.30 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.05 Total: 53.13 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.07 Total: -1.63 kcal Total: -64.35 3.93 -60.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998935.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.077 kcal (2) G-P(sol) polarization free energy of solvation -64.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds