Wall clock time and date at job start Mon Mar 30 2020 07:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 11 11 N 1.46900 * 109.47041 * 59.99927 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.38237 * 120.00640 * 264.99728 * 12 9 7 14 14 C 1.38214 * 120.01412 * 180.02562 * 13 12 9 15 15 C 1.38260 * 120.02991 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99812 * 179.97438 * 15 14 13 17 17 F 1.39896 * 109.47048 * 300.00405 * 16 15 14 18 18 F 1.39895 * 109.46955 * 60.00119 * 16 15 14 19 19 C 1.38201 * 120.01074 * 359.97438 * 15 14 13 20 20 C 1.38326 * 120.00679 * 84.72635 * 12 9 7 21 21 Cl 1.73599 * 120.01282 * 359.97367 * 20 12 9 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.00900 * 111.00100 * 59.99591 * 11 9 7 24 24 H 1.00898 * 111.00378 * 183.95803 * 11 9 7 25 25 H 1.08005 * 119.99353 * 0.02562 * 13 12 9 26 26 H 1.08009 * 119.98757 * 179.97438 * 14 13 12 27 27 H 1.08997 * 109.47077 * 180.02562 * 16 15 14 28 28 H 1.07994 * 120.00597 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4070 -2.5773 -1.1992 12 6 2.2304 -3.6445 0.0018 13 6 2.6012 -4.2384 -1.1902 14 6 3.4990 -5.2892 -1.1891 15 6 4.0272 -5.7469 0.0038 16 6 5.0056 -6.8931 0.0042 17 9 4.3991 -8.0240 -0.5530 18 9 6.1301 -6.5466 -0.7524 19 6 3.6580 -5.1534 1.1961 20 6 2.7627 -4.0983 1.1952 21 17 2.3034 -3.3480 2.6918 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9653 -2.5259 -2.0381 24 1 -0.1570 -3.4139 -1.1908 25 1 2.1894 -3.8811 -2.1225 26 1 3.7881 -5.7531 -2.1207 27 1 5.3092 -7.1113 1.0280 28 1 4.0709 -5.5106 2.1278 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260072352.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:59 Heat of formation + Delta-G solvation = -89.757703 kcal Electronic energy + Delta-G solvation = -17130.684799 eV Core-core repulsion = 13842.669909 eV Total energy + Delta-G solvation = -3288.014890 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.02340 -47.01010 -39.34642 -35.97413 -35.26693 -31.98529 -30.62954 -30.27572 -26.73198 -24.95451 -22.89021 -22.07726 -20.40151 -17.62031 -17.39420 -17.24436 -16.93301 -15.45352 -15.21887 -14.83399 -14.34472 -13.97029 -13.69559 -13.53897 -13.39420 -13.32185 -12.99482 -12.38991 -12.20107 -11.56554 -11.25869 -11.15352 -10.94120 -10.74017 -10.60412 -10.12454 -10.01276 -9.15783 -8.61203 -8.38203 -8.11384 -7.66361 -6.22294 -4.05617 1.29727 1.39120 2.57752 3.46297 3.49112 3.64766 3.71355 3.74824 4.12727 4.52955 4.57980 4.96427 5.01226 5.15409 5.35642 5.45663 5.58458 5.83209 5.90304 6.03105 6.29935 6.49155 6.54112 6.94935 7.09444 7.86793 8.18086 8.56586 8.63722 8.99702 9.76925 11.18127 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.026833 B = 0.006069 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.231850 B = 4612.762302 C = 4799.356365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.042 3.958 3 Si 1.065 2.935 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.601 4.601 8 H 0.046 0.954 9 C 0.233 3.767 10 H 0.055 0.945 11 N -0.830 5.830 12 C -0.035 4.035 13 C -0.123 4.123 14 C -0.075 4.075 15 C -0.190 4.190 16 C 0.319 3.681 17 F -0.203 7.203 18 F -0.201 7.201 19 C -0.080 4.080 20 C -0.038 4.038 21 Cl -0.055 7.055 22 H 0.290 0.710 23 H 0.327 0.673 24 H 0.304 0.696 25 H 0.132 0.868 26 H 0.125 0.875 27 H 0.115 0.885 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.269 -12.333 1.292 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.168 4.168 3 Si 0.894 3.106 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.639 4.639 8 H 0.064 0.936 9 C 0.124 3.876 10 H 0.072 0.928 11 N -0.358 5.358 12 C -0.039 4.039 13 C -0.142 4.142 14 C -0.093 4.093 15 C -0.191 4.191 16 C 0.266 3.734 17 F -0.184 7.184 18 F -0.183 7.183 19 C -0.099 4.099 20 C -0.065 4.065 21 Cl -0.025 7.025 22 H 0.103 0.897 23 H 0.141 0.859 24 H 0.115 0.885 25 H 0.149 0.851 26 H 0.143 0.857 27 H 0.133 0.867 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.672 -9.959 1.653 12.101 hybrid contribution 0.918 -2.574 -0.232 2.743 sum 7.590 -12.534 1.421 14.722 Atomic orbital electron populations 1.70527 1.06815 1.32801 1.42098 1.25570 0.96545 1.01671 0.93037 0.83621 0.74732 0.75572 0.76659 1.21585 1.21680 1.21098 1.21516 0.93231 0.89754 1.59426 0.93554 1.18583 0.88144 0.90045 0.90853 0.92753 1.59424 1.28515 1.42513 1.05325 1.21716 0.96177 0.95364 0.90600 1.20971 0.98744 0.96238 0.98210 1.20913 0.95506 0.95939 0.96958 1.19971 1.03507 1.00849 0.94819 1.20275 0.79698 0.81040 0.92408 1.92997 1.84029 1.53350 1.88023 1.93004 1.53319 1.92471 1.79468 1.20688 0.96785 0.95138 0.97329 1.20664 1.00592 0.96740 0.88525 1.98360 1.91320 1.81690 1.31176 0.89739 0.85906 0.88529 0.85072 0.85743 0.86722 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.51 55.43 0.75 -25.29 15 2 C 0.04 1.16 5.39 -17.82 -0.10 1.06 15 3 Si 1.07 24.94 29.90 -169.99 -5.08 19.86 15 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 7 C -0.60 -15.94 8.71 -34.44 -0.30 -16.24 15 8 H 0.05 1.27 7.74 -52.48 -0.41 0.87 15 9 C 0.23 5.40 1.97 -70.02 -0.14 5.26 15 10 H 0.05 1.38 7.00 -51.93 -0.36 1.02 15 11 N -0.83 -17.89 7.39 -6.65 -0.05 -17.94 15 12 C -0.04 -0.70 4.99 -104.59 -0.52 -1.22 15 13 C -0.12 -2.14 9.27 -39.59 -0.37 -2.51 15 14 C -0.07 -1.15 9.60 -39.58 -0.38 -1.53 15 15 C -0.19 -2.75 5.37 -104.63 -0.56 -3.31 15 16 C 0.32 3.80 5.45 36.01 0.20 3.99 15 17 F -0.20 -2.62 17.26 2.25 0.04 -2.58 15 18 F -0.20 -2.69 17.26 2.25 0.04 -2.66 15 19 C -0.08 -1.21 9.46 -39.54 -0.37 -1.58 15 20 C -0.04 -0.69 6.31 -39.50 -0.25 -0.94 15 21 Cl -0.05 -1.01 27.41 -51.86 -1.42 -2.43 15 22 H 0.29 8.47 6.39 -40.82 -0.26 8.21 15 23 H 0.33 6.72 7.21 -39.29 -0.28 6.43 15 24 H 0.30 5.74 9.06 -39.29 -0.36 5.38 15 25 H 0.13 2.13 6.29 -52.48 -0.33 1.80 15 26 H 0.12 1.67 8.06 -52.48 -0.42 1.25 15 27 H 0.12 0.96 7.88 -51.93 -0.41 0.55 15 28 H 0.13 1.56 7.94 -52.49 -0.42 1.14 15 LS Contribution 268.13 15.07 4.04 4.04 Total: -1.00 -29.49 268.13 -6.52 -36.01 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -2.04 Total: 8.01 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -2.79 Total: -17.02 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.70 Total: -43.23 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.08 Total: -5.24 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.86 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.42 Total: -2.43 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.49 -6.52 -36.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260072352.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.745 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds