Wall clock time and date at job start Mon Mar 30 2020 07:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 11 11 N 1.46900 * 109.47041 * 59.99927 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.38237 * 120.00640 * 264.99728 * 12 9 7 14 14 C 1.38214 * 120.01412 * 180.02562 * 13 12 9 15 15 C 1.38260 * 120.02991 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99812 * 179.97438 * 15 14 13 17 17 F 1.39896 * 109.47048 * 300.00405 * 16 15 14 18 18 F 1.39895 * 109.46955 * 60.00119 * 16 15 14 19 19 C 1.38201 * 120.01074 * 359.97438 * 15 14 13 20 20 C 1.38326 * 120.00679 * 84.72635 * 12 9 7 21 21 Cl 1.73599 * 120.01282 * 359.97367 * 20 12 9 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.00900 * 111.00100 * 59.99591 * 11 9 7 24 24 H 1.00898 * 111.00378 * 183.95803 * 11 9 7 25 25 H 1.08005 * 119.99353 * 0.02562 * 13 12 9 26 26 H 1.08009 * 119.98757 * 179.97438 * 14 13 12 27 27 H 1.08997 * 109.47077 * 180.02562 * 16 15 14 28 28 H 1.07994 * 120.00597 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4070 -2.5773 -1.1992 12 6 2.2304 -3.6445 0.0018 13 6 2.6012 -4.2384 -1.1902 14 6 3.4990 -5.2892 -1.1891 15 6 4.0272 -5.7469 0.0038 16 6 5.0056 -6.8931 0.0042 17 9 4.3991 -8.0240 -0.5530 18 9 6.1301 -6.5466 -0.7524 19 6 3.6580 -5.1534 1.1961 20 6 2.7627 -4.0983 1.1952 21 17 2.3034 -3.3480 2.6918 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9653 -2.5259 -2.0381 24 1 -0.1570 -3.4139 -1.1908 25 1 2.1894 -3.8811 -2.1225 26 1 3.7881 -5.7531 -2.1207 27 1 5.3092 -7.1113 1.0280 28 1 4.0709 -5.5106 2.1278 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260072352.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:59 Heat of formation + Delta-G solvation = -107.763777 kcal Electronic energy + Delta-G solvation = -17131.465601 eV Core-core repulsion = 13842.669909 eV Total energy + Delta-G solvation = -3288.795692 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.98767 -47.98078 -40.69133 -37.36724 -36.96327 -33.80221 -31.95413 -31.76634 -28.27863 -26.54186 -24.36086 -23.48838 -21.89360 -18.96236 -18.72076 -18.36251 -18.20230 -16.96131 -16.64951 -16.19461 -15.85914 -15.53005 -15.00704 -14.89048 -14.80232 -14.36669 -14.29751 -13.92326 -13.70306 -13.10828 -12.70277 -12.59494 -12.50755 -12.24593 -12.10598 -11.92791 -11.54071 -10.93880 -10.46276 -9.97568 -9.66470 -9.37715 -8.35512 -6.20327 -0.01432 0.11245 1.20607 1.56309 1.63557 1.80486 2.41564 2.65978 2.72152 3.21132 3.33911 3.55610 3.86220 3.93549 4.03921 4.06224 4.17764 4.31461 4.58349 4.70244 4.98195 5.03430 5.16494 5.43655 5.63129 5.92504 6.23037 6.65494 6.79802 7.01494 7.68382 9.02022 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.026833 B = 0.006069 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.231850 B = 4612.762302 C = 4799.356365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 1.105 2.895 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.286 1.286 7 C -0.599 4.599 8 H 0.032 0.968 9 C 0.239 3.761 10 H 0.026 0.974 11 N -0.838 5.838 12 C -0.067 4.067 13 C -0.128 4.128 14 C -0.076 4.076 15 C -0.183 4.183 16 C 0.322 3.678 17 F -0.208 7.208 18 F -0.209 7.209 19 C -0.070 4.070 20 C -0.056 4.056 21 Cl -0.067 7.067 22 H 0.279 0.721 23 H 0.332 0.668 24 H 0.319 0.681 25 H 0.135 0.865 26 H 0.146 0.854 27 H 0.162 0.838 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.125 -13.826 1.330 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.929 3.071 4 H -0.206 1.206 5 H -0.203 1.203 6 H -0.212 1.212 7 C -0.637 4.637 8 H 0.050 0.950 9 C 0.130 3.870 10 H 0.044 0.956 11 N -0.367 5.367 12 C -0.070 4.070 13 C -0.146 4.146 14 C -0.094 4.094 15 C -0.184 4.184 16 C 0.269 3.731 17 F -0.189 7.189 18 F -0.190 7.190 19 C -0.089 4.089 20 C -0.083 4.083 21 Cl -0.038 7.038 22 H 0.091 0.909 23 H 0.147 0.853 24 H 0.131 0.869 25 H 0.153 0.847 26 H 0.163 0.837 27 H 0.179 0.821 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.539 -11.474 1.689 14.402 hybrid contribution 0.389 -2.248 -0.271 2.297 sum 8.928 -13.722 1.418 16.432 Atomic orbital electron populations 1.70636 1.07670 1.32188 1.44993 1.26742 0.96648 1.04960 0.92571 0.83086 0.74200 0.72566 0.77206 1.20571 1.20313 1.21236 1.21727 0.92638 0.91523 1.57854 0.94979 1.18161 0.88378 0.90334 0.90156 0.95627 1.59176 1.28784 1.43726 1.05032 1.21420 0.97282 0.95848 0.92432 1.21031 0.99307 0.96845 0.97455 1.21197 0.94574 0.95077 0.98524 1.20381 1.02915 1.00973 0.94121 1.20590 0.78550 0.79602 0.94356 1.92994 1.84184 1.53382 1.88330 1.92996 1.53545 1.92529 1.79968 1.21017 0.95188 0.93475 0.99199 1.20874 1.01771 0.98027 0.87623 1.98350 1.91585 1.82146 1.31673 0.90907 0.85340 0.86854 0.84726 0.83658 0.82061 0.81435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.00 13.51 21.45 0.29 -54.71 15 2 C -0.01 -0.29 5.39 84.65 0.46 0.17 15 3 Si 1.10 50.50 29.90 68.60 2.05 52.55 15 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 6 H -0.29 -13.07 7.11 99.48 0.71 -12.37 15 7 C -0.60 -32.25 8.71 25.60 0.22 -32.02 15 8 H 0.03 1.78 7.74 -2.91 -0.02 1.75 15 9 C 0.24 11.32 1.97 43.42 0.09 11.40 15 10 H 0.03 1.36 7.00 -2.39 -0.02 1.34 15 11 N -0.84 -36.73 7.39 -174.95 -1.29 -38.02 15 12 C -0.07 -2.63 4.99 -19.85 -0.10 -2.73 15 13 C -0.13 -4.31 9.27 22.26 0.21 -4.10 15 14 C -0.08 -2.13 9.60 22.27 0.21 -1.92 15 15 C -0.18 -4.64 5.37 -19.87 -0.11 -4.75 15 16 C 0.32 6.23 5.45 71.24 0.39 6.62 15 17 F -0.21 -4.57 17.26 44.97 0.78 -3.79 15 18 F -0.21 -4.80 17.26 44.97 0.78 -4.02 15 19 C -0.07 -1.90 9.46 22.29 0.21 -1.68 15 20 C -0.06 -1.98 6.31 22.32 0.14 -1.84 15 21 Cl -0.07 -2.45 27.41 -2.72 -0.07 -2.52 15 22 H 0.28 16.83 6.39 -92.71 -0.59 16.24 15 23 H 0.33 13.79 7.21 -89.69 -0.65 13.14 15 24 H 0.32 12.24 9.06 -89.70 -0.81 11.42 15 25 H 0.14 4.30 6.29 -2.91 -0.02 4.28 15 26 H 0.15 3.46 8.06 -2.91 -0.02 3.43 15 27 H 0.16 1.74 7.88 -2.39 -0.02 1.72 15 28 H 0.17 3.22 7.94 -2.91 -0.02 3.20 15 Total: -1.00 -64.22 268.13 4.19 -60.03 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.05 Total: 21.35 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 1.72 Total: -30.86 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -1.00 Total: -92.73 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 1.55 Total: -7.82 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.05 Total: 52.55 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -0.07 Total: -2.52 kcal Total: -64.22 4.19 -60.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260072352.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.733 kcal (2) G-P(sol) polarization free energy of solvation -64.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds