Wall clock time and date at job start Mon Mar 30 2020 07:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48491 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46948 * 300.00094 * 3 2 1 6 6 H 1.48500 * 109.46809 * 60.00013 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 N 1.46899 * 109.47244 * 300.00290 * 9 7 2 12 12 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 13 13 C 1.38235 * 120.00564 * 99.72074 * 12 9 7 14 14 C 1.38222 * 120.01040 * 179.77054 * 13 12 9 15 15 C 1.38261 * 120.02967 * 0.50918 * 14 13 12 16 16 C 1.50695 * 119.99771 * 179.77013 * 15 14 13 17 17 F 1.39899 * 109.47500 * 119.97803 * 16 15 14 18 18 F 1.39899 * 109.46865 * 239.97920 * 16 15 14 19 19 C 1.38193 * 120.00860 * 359.74607 * 15 14 13 20 20 C 1.38328 * 120.00720 * 280.00441 * 12 9 7 21 21 Cl 1.73604 * 120.01193 * 359.94678 * 20 12 9 22 22 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 23 23 H 1.00893 * 111.00096 * 176.04982 * 11 9 7 24 24 H 1.00903 * 110.99833 * 299.99603 * 11 9 7 25 25 H 1.08000 * 119.99386 * 0.02562 * 13 12 9 26 26 H 1.08003 * 119.98295 * 180.24047 * 14 13 12 27 27 H 1.09000 * 109.46715 * 359.97438 * 16 15 14 28 28 H 1.08006 * 120.00345 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1992 12 6 2.2303 -3.6447 -0.0005 13 6 2.5258 -4.3015 1.1794 14 6 3.4204 -5.3552 1.1787 15 6 4.0280 -5.7461 -0.0001 16 6 5.0071 -6.8917 0.0009 17 9 4.5422 -7.9033 -0.8462 18 9 6.2524 -6.4412 -0.4504 19 6 3.7373 -5.0869 -1.1793 20 6 2.8380 -4.0353 -1.1802 21 17 2.4718 -3.2070 -2.6613 22 1 -0.4849 0.8401 0.0004 23 1 -0.1570 -3.4138 1.1907 24 1 0.9652 -2.5261 2.0381 25 1 2.0546 -3.9939 2.1012 26 1 3.6480 -5.8705 2.1001 27 1 5.1074 -7.2830 1.0133 28 1 4.2118 -5.3926 -2.1001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260072356.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:09 Heat of formation + Delta-G solvation = -83.599176 kcal Electronic energy + Delta-G solvation = -17111.619150 eV Core-core repulsion = 13823.871314 eV Total energy + Delta-G solvation = -3287.747836 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 3.25 seconds Orbital eigenvalues (eV) -48.96551 -46.95418 -39.24386 -35.84460 -34.94998 -31.96732 -30.69429 -30.11222 -26.80511 -25.27741 -22.60454 -22.26793 -20.14643 -17.52309 -17.32427 -17.18791 -16.53049 -15.39829 -15.06518 -14.67117 -14.41986 -14.04712 -13.91030 -13.46186 -13.33882 -13.01597 -12.80735 -12.41832 -12.02289 -11.53374 -11.08307 -11.05479 -10.99298 -10.74882 -10.68653 -10.27332 -9.80901 -9.40329 -8.59476 -8.46699 -8.14883 -7.25687 -5.92097 -4.06571 1.37422 1.48369 2.72288 3.31165 3.39656 3.43456 3.75786 3.82954 4.16483 4.46876 4.61380 5.06284 5.08566 5.15015 5.32380 5.54891 5.66691 5.92434 6.02727 6.18016 6.38636 6.60459 6.65490 7.04419 7.34477 7.85625 8.08839 8.50962 8.87515 9.05711 9.61634 11.12461 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.028271 B = 0.006091 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.188999 B = 4595.528637 C = 4766.292207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.087 3.913 3 Si 0.883 3.117 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.250 3.750 10 H 0.063 0.937 11 N -0.810 5.810 12 C -0.042 4.042 13 C -0.127 4.127 14 C -0.083 4.083 15 C -0.192 4.192 16 C 0.319 3.681 17 F -0.203 7.203 18 F -0.202 7.202 19 C -0.074 4.074 20 C -0.035 4.035 21 Cl -0.054 7.054 22 H 0.256 0.744 23 H 0.300 0.700 24 H 0.319 0.681 25 H 0.133 0.867 26 H 0.126 0.874 27 H 0.116 0.884 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.536 -12.105 1.414 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.120 4.120 3 Si 0.711 3.289 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.072 0.928 9 C 0.140 3.860 10 H 0.081 0.919 11 N -0.336 5.336 12 C -0.045 4.045 13 C -0.145 4.145 14 C -0.101 4.101 15 C -0.194 4.194 16 C 0.265 3.735 17 F -0.185 7.185 18 F -0.184 7.184 19 C -0.093 4.093 20 C -0.063 4.063 21 Cl -0.025 7.025 22 H 0.066 0.934 23 H 0.111 0.889 24 H 0.132 0.868 25 H 0.150 0.850 26 H 0.144 0.856 27 H 0.133 0.867 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.991 -11.237 0.983 12.772 hybrid contribution 1.145 0.088 -0.007 1.148 sum 7.136 -11.149 0.976 13.273 Atomic orbital electron populations 1.70108 1.05631 1.25675 1.46550 1.24885 0.94622 0.98449 0.94088 0.86695 0.80346 0.84312 0.77542 1.19821 1.21031 1.21044 1.20656 0.92064 0.88762 1.54589 0.92813 1.18420 0.87561 0.88454 0.91585 0.91901 1.59143 1.27978 1.42200 1.04295 1.22023 0.96062 0.95994 0.90455 1.20983 0.99218 0.96015 0.98334 1.20867 0.96000 0.96910 0.96335 1.19976 1.03379 1.00740 0.95262 1.20318 0.77877 0.83410 0.91846 1.92998 1.88879 1.61849 1.74738 1.93005 1.44069 1.89926 1.91365 1.20743 0.96411 0.94357 0.97836 1.20706 1.00330 0.96143 0.89094 1.98361 1.93595 1.77975 1.32542 0.93433 0.88923 0.86803 0.84958 0.85639 0.86696 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.85 12.77 55.43 0.71 -23.14 15 2 C 0.09 2.34 5.39 -17.82 -0.10 2.24 15 3 Si 0.88 21.04 29.54 -169.99 -5.02 16.01 15 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 7 C -0.52 -13.66 8.49 -34.44 -0.29 -13.96 15 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 15 9 C 0.25 5.81 2.31 -70.02 -0.16 5.65 15 10 H 0.06 1.64 7.36 -51.93 -0.38 1.26 15 11 N -0.81 -17.66 8.02 -6.65 -0.05 -17.71 15 12 C -0.04 -0.83 5.02 -104.59 -0.52 -1.35 15 13 C -0.13 -2.09 9.25 -39.59 -0.37 -2.46 15 14 C -0.08 -1.14 9.67 -39.58 -0.38 -1.52 15 15 C -0.19 -2.79 5.37 -104.63 -0.56 -3.35 15 16 C 0.32 3.82 5.45 36.00 0.20 4.01 15 17 F -0.20 -2.69 17.26 2.25 0.04 -2.65 15 18 F -0.20 -2.76 17.26 2.25 0.04 -2.72 15 19 C -0.07 -1.23 9.38 -39.55 -0.37 -1.60 15 20 C -0.04 -0.67 6.30 -39.50 -0.25 -0.92 15 21 Cl -0.05 -1.05 27.33 -51.86 -1.42 -2.46 15 22 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 23 H 0.30 5.78 9.06 -39.30 -0.36 5.42 15 24 H 0.32 6.48 7.27 -39.29 -0.29 6.20 15 25 H 0.13 2.00 6.25 -52.49 -0.33 1.67 15 26 H 0.13 1.25 7.95 -52.48 -0.42 0.83 15 27 H 0.12 0.93 7.88 -51.93 -0.41 0.52 15 28 H 0.13 1.96 8.06 -52.48 -0.42 1.54 15 LS Contribution 269.98 15.07 4.07 4.07 Total: -1.00 -29.02 269.98 -6.59 -35.61 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -2.14 Total: 6.26 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -2.81 Total: -13.26 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.65 Total: -40.85 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.08 Total: -5.38 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.42 Total: -2.46 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.02 -6.59 -35.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260072356.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.989 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.25 seconds