Wall clock time and date at job start Mon Mar 30 2020 07:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48491 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46948 * 300.00094 * 3 2 1 6 6 H 1.48500 * 109.46809 * 60.00013 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 N 1.46899 * 109.47244 * 300.00290 * 9 7 2 12 12 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 13 13 C 1.38235 * 120.00564 * 99.72074 * 12 9 7 14 14 C 1.38222 * 120.01040 * 179.77054 * 13 12 9 15 15 C 1.38261 * 120.02967 * 0.50918 * 14 13 12 16 16 C 1.50695 * 119.99771 * 179.77013 * 15 14 13 17 17 F 1.39899 * 109.47500 * 119.97803 * 16 15 14 18 18 F 1.39899 * 109.46865 * 239.97920 * 16 15 14 19 19 C 1.38193 * 120.00860 * 359.74607 * 15 14 13 20 20 C 1.38328 * 120.00720 * 280.00441 * 12 9 7 21 21 Cl 1.73604 * 120.01193 * 359.94678 * 20 12 9 22 22 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 23 23 H 1.00893 * 111.00096 * 176.04982 * 11 9 7 24 24 H 1.00903 * 110.99833 * 299.99603 * 11 9 7 25 25 H 1.08000 * 119.99386 * 0.02562 * 13 12 9 26 26 H 1.08003 * 119.98295 * 180.24047 * 14 13 12 27 27 H 1.09000 * 109.46715 * 359.97438 * 16 15 14 28 28 H 1.08006 * 120.00345 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1992 12 6 2.2303 -3.6447 -0.0005 13 6 2.5258 -4.3015 1.1794 14 6 3.4204 -5.3552 1.1787 15 6 4.0280 -5.7461 -0.0001 16 6 5.0071 -6.8917 0.0009 17 9 4.5422 -7.9033 -0.8462 18 9 6.2524 -6.4412 -0.4504 19 6 3.7373 -5.0869 -1.1793 20 6 2.8380 -4.0353 -1.1802 21 17 2.4718 -3.2070 -2.6613 22 1 -0.4849 0.8401 0.0004 23 1 -0.1570 -3.4138 1.1907 24 1 0.9652 -2.5261 2.0381 25 1 2.0546 -3.9939 2.1012 26 1 3.6480 -5.8705 2.1001 27 1 5.1074 -7.2830 1.0133 28 1 4.2118 -5.3926 -2.1001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260072356.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:01 Heat of formation + Delta-G solvation = -101.586926 kcal Electronic energy + Delta-G solvation = -17112.399157 eV Core-core repulsion = 13823.871314 eV Total energy + Delta-G solvation = -3288.527843 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -49.93522 -47.93584 -40.57070 -37.28314 -36.61282 -33.84028 -32.02343 -31.51476 -28.44775 -26.78938 -24.00917 -23.62231 -21.63096 -18.65512 -18.53257 -18.29756 -18.15298 -16.93246 -16.51634 -16.12799 -15.96380 -15.70104 -14.92520 -14.74267 -14.48754 -14.32316 -14.17782 -14.00960 -13.49144 -13.12162 -12.79763 -12.56274 -12.41988 -12.27444 -12.14419 -11.95471 -11.44324 -11.28058 -10.54047 -9.90247 -9.59561 -8.94796 -7.96654 -6.15326 0.08985 0.20269 1.31567 1.40781 1.44528 1.53490 2.42877 2.59146 2.78671 3.26983 3.28426 3.65884 3.86565 4.11394 4.12361 4.16836 4.36549 4.48301 4.68771 4.78312 5.15354 5.20213 5.26591 5.59806 5.75532 5.77511 6.18141 6.66156 7.11484 7.26578 7.55413 9.07112 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.028271 B = 0.006091 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.188999 B = 4595.528637 C = 4766.292207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.041 3.959 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.523 4.523 8 H 0.040 0.960 9 C 0.258 3.742 10 H 0.025 0.975 11 N -0.820 5.820 12 C -0.072 4.072 13 C -0.129 4.129 14 C -0.064 4.064 15 C -0.187 4.187 16 C 0.320 3.680 17 F -0.212 7.212 18 F -0.213 7.213 19 C -0.084 4.084 20 C -0.055 4.055 21 Cl -0.074 7.074 22 H 0.254 0.746 23 H 0.315 0.685 24 H 0.328 0.672 25 H 0.146 0.854 26 H 0.179 0.821 27 H 0.171 0.829 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.058 -13.759 3.177 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.561 4.561 8 H 0.059 0.941 9 C 0.148 3.852 10 H 0.043 0.957 11 N -0.349 5.349 12 C -0.075 4.075 13 C -0.147 4.147 14 C -0.081 4.081 15 C -0.188 4.188 16 C 0.267 3.733 17 F -0.193 7.193 18 F -0.194 7.194 19 C -0.103 4.103 20 C -0.082 4.082 21 Cl -0.045 7.045 22 H 0.063 0.937 23 H 0.127 0.873 24 H 0.142 0.858 25 H 0.163 0.837 26 H 0.196 0.804 27 H 0.188 0.812 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.526 -12.900 2.746 15.185 hybrid contribution 0.722 0.482 -0.542 1.023 sum 8.248 -12.418 2.204 15.070 Atomic orbital electron populations 1.70215 1.06767 1.26098 1.48268 1.25516 0.95280 1.01225 0.94232 0.85846 0.79170 0.81122 0.77426 1.19730 1.21135 1.20571 1.20861 0.91535 0.90454 1.53296 0.94145 1.17933 0.87724 0.88956 0.90619 0.95701 1.58903 1.28392 1.43432 1.04156 1.21710 0.97031 0.96496 0.92313 1.21195 0.99705 0.96436 0.97396 1.21345 0.93516 0.95258 0.98017 1.20445 1.03024 1.00747 0.94589 1.20766 0.76397 0.82190 0.93988 1.92989 1.88962 1.61943 1.75390 1.92991 1.44636 1.90100 1.91713 1.20922 0.96009 0.93958 0.99376 1.20865 1.01718 0.97333 0.88323 1.98342 1.93872 1.78603 1.33695 0.93666 0.87328 0.85840 0.83673 0.80380 0.81232 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.46 12.77 21.45 0.27 -50.19 15 2 C 0.04 2.25 5.39 84.65 0.46 2.71 15 3 Si 0.94 43.71 29.54 68.60 2.03 45.74 15 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 15 5 H -0.29 -13.23 7.11 99.48 0.71 -12.53 15 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 7 C -0.52 -27.81 8.49 25.60 0.22 -27.59 15 8 H 0.04 2.21 7.74 -2.91 -0.02 2.19 15 9 C 0.26 12.23 2.31 43.42 0.10 12.33 15 10 H 0.03 1.37 7.36 -2.39 -0.02 1.35 15 11 N -0.82 -35.82 8.02 -174.95 -1.40 -37.22 15 12 C -0.07 -2.83 5.02 -19.84 -0.10 -2.93 15 13 C -0.13 -3.93 9.25 22.27 0.21 -3.72 15 14 C -0.06 -1.46 9.67 22.27 0.22 -1.24 15 15 C -0.19 -4.74 5.37 -19.87 -0.11 -4.85 15 16 C 0.32 6.20 5.45 71.23 0.39 6.58 15 17 F -0.21 -4.87 17.26 44.97 0.78 -4.10 15 18 F -0.21 -5.09 17.26 44.97 0.78 -4.31 15 19 C -0.08 -2.66 9.38 22.29 0.21 -2.45 15 20 C -0.06 -2.10 6.30 22.32 0.14 -1.96 15 21 Cl -0.07 -2.98 27.33 -2.72 -0.07 -3.05 15 22 H 0.25 14.05 8.31 -92.71 -0.77 13.28 15 23 H 0.31 12.06 9.06 -89.70 -0.81 11.25 15 24 H 0.33 13.09 7.27 -89.69 -0.65 12.44 15 25 H 0.15 3.97 6.25 -2.91 -0.02 3.95 15 26 H 0.18 2.25 7.95 -2.91 -0.02 2.22 15 27 H 0.17 1.57 7.88 -2.39 -0.02 1.55 15 28 H 0.13 3.98 8.06 -2.91 -0.02 3.96 15 Total: -1.00 -64.34 269.98 3.86 -60.48 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -0.24 Total: 15.79 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 1.73 Total: -23.13 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -1.13 Total: -87.41 kcal Atomic # 9 Polarization: -9.96 SS G_CDS: 1.55 Total: -8.41 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 17 Polarization: -2.98 SS G_CDS: -0.07 Total: -3.05 kcal Total: -64.34 3.86 -60.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260072356.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.110 kcal (2) G-P(sol) polarization free energy of solvation -64.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds