Wall clock time and date at job start Mon Mar 30 2020 07:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86801 * 119.99917 * 2 1 4 4 H 1.48503 * 109.47032 * 90.00452 * 3 2 1 5 5 H 1.48497 * 109.47119 * 210.00082 * 3 2 1 6 6 H 1.48501 * 109.47510 * 330.00473 * 3 2 1 7 7 C 1.40040 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00033 * 21.05097 * 7 2 1 9 9 C 1.39881 * 119.99756 * 201.04714 * 7 2 1 10 10 C 1.38304 * 125.39420 * 191.93856 * 9 7 2 11 11 C 1.36755 * 114.21624 * 179.97438 * 10 9 7 12 12 C 1.50701 * 122.34360 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47344 * 104.99831 * 12 11 10 14 14 C 1.34704 * 115.31584 * 0.02562 * 11 10 9 15 15 Br 1.89100 * 124.93655 * 180.02562 * 14 11 10 16 16 S 1.75800 * 110.13011 * 359.75556 * 14 11 10 17 17 H 0.97002 * 120.00110 * 174.66451 * 1 2 3 18 18 H 1.07997 * 122.89474 * 359.96369 * 10 9 7 19 19 H 1.08998 * 109.46994 * 224.99923 * 12 11 10 20 20 H 1.09001 * 109.47170 * 344.99389 * 12 11 10 21 21 H 1.00901 * 111.00349 * 56.05003 * 13 12 11 22 22 H 1.00907 * 111.00129 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4906 2.0464 1.4001 5 1 3.5405 1.4402 -0.7000 6 1 1.4404 2.6528 -0.6999 7 6 2.0092 -1.2128 -0.0005 8 1 1.5232 -2.1167 -0.3369 9 6 3.3380 -1.2533 0.4345 10 6 4.2034 -2.3192 0.2675 11 6 5.4535 -2.1127 0.7821 12 6 6.5407 -3.1530 0.7009 13 7 7.5166 -2.7625 -0.3253 14 6 5.6450 -0.9143 1.3667 15 35 7.2625 -0.3441 2.1632 16 16 4.1751 0.0455 1.2748 17 1 -0.4850 -0.8364 -0.0781 18 1 3.9167 -3.2356 -0.2267 19 1 7.0407 -3.2322 1.6662 20 1 6.1031 -4.1162 0.4384 21 1 7.8894 -1.8436 -0.1388 22 1 8.2566 -3.4445 -0.3988 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260365781.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:52 Heat of formation + Delta-G solvation = 0.883309 kcal Electronic energy + Delta-G solvation = -10335.380412 eV Core-core repulsion = 8254.875618 eV Total energy + Delta-G solvation = -2080.504794 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.09006 -34.54702 -32.87950 -30.63612 -28.87380 -24.90436 -24.25387 -20.56779 -18.98882 -17.57808 -16.09924 -15.04875 -14.62954 -14.15120 -13.74009 -13.34031 -12.35702 -12.11461 -11.91274 -11.39679 -11.12082 -10.76611 -10.67359 -10.35784 -9.86868 -9.48470 -9.41260 -8.90653 -8.29082 -7.87882 -7.57262 -7.09085 -4.77336 2.18909 2.37167 2.87207 3.04166 3.24066 3.31673 3.66670 3.77975 3.80801 4.70940 5.28005 5.73196 5.91359 6.22253 6.86430 7.02742 7.16382 7.31885 7.49687 7.69322 7.79519 7.84371 8.06481 8.25000 9.51022 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.035334 B = 0.009572 C = 0.007971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.249379 B = 2924.517983 C = 3511.851400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.047 3.953 3 Si 0.973 3.027 4 H -0.235 1.235 5 H -0.221 1.221 6 H -0.245 1.245 7 C -0.431 4.431 8 H 0.098 0.902 9 C 0.056 3.944 10 C -0.338 4.338 11 C 0.025 3.975 12 C 0.117 3.883 13 N -0.841 5.841 14 C -0.345 4.345 15 Br -0.069 7.069 16 S 0.000 6.000 17 H 0.295 0.705 18 H 0.112 0.888 19 H 0.029 0.971 20 H 0.071 0.929 21 H 0.343 0.657 22 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.156 -0.017 2.236 9.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.179 4.179 3 Si 0.793 3.207 4 H -0.160 1.160 5 H -0.144 1.144 6 H -0.170 1.170 7 C -0.467 4.467 8 H 0.116 0.884 9 C -0.064 4.064 10 C -0.362 4.362 11 C 0.013 3.987 12 C -0.015 4.015 13 N -0.371 5.371 14 C -0.537 4.537 15 Br 0.013 6.987 16 S 0.255 5.745 17 H 0.107 0.893 18 H 0.130 0.870 19 H 0.048 0.952 20 H 0.090 0.910 21 H 0.156 0.844 22 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.523 3.097 2.563 9.423 hybrid contribution 0.692 -3.296 0.124 3.370 sum 9.215 -0.200 2.687 9.601 Atomic orbital electron populations 1.70568 1.07949 1.33964 1.26839 1.27485 0.95685 1.04420 0.90337 0.84299 0.78839 0.74844 0.82689 1.16020 1.14447 1.16956 1.20305 0.94953 0.97857 1.33536 0.88436 1.21773 0.95768 0.93957 0.94929 1.19445 0.93270 1.02476 1.21014 1.17973 0.94500 0.92066 0.94206 1.20445 0.91736 0.96805 0.92521 1.58729 1.19797 1.07304 1.51292 1.24337 0.95973 1.02863 1.30561 1.96224 1.29581 1.90618 1.82231 1.83794 1.05998 1.21849 1.62867 0.89296 0.86979 0.95245 0.91048 0.84356 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.96 13.66 55.56 0.76 -18.20 14 2 C 0.05 1.15 5.50 -17.27 -0.10 1.06 14 3 Si 0.97 20.88 24.77 -169.99 -4.21 16.67 14 4 H -0.23 -4.89 6.85 56.52 0.39 -4.51 14 5 H -0.22 -4.77 6.54 56.52 0.37 -4.40 14 6 H -0.25 -4.93 7.11 56.52 0.40 -4.52 14 7 C -0.43 -10.92 9.62 -38.29 -0.37 -11.29 14 8 H 0.10 2.48 8.06 -52.49 -0.42 2.06 14 9 C 0.06 1.41 5.81 -38.94 -0.23 1.18 14 10 C -0.34 -8.22 9.93 -40.09 -0.40 -8.62 14 11 C 0.03 0.57 5.31 -106.41 -0.57 0.01 14 12 C 0.12 2.17 6.53 -4.98 -0.03 2.14 14 13 N -0.84 -14.19 9.61 -11.41 -0.11 -14.30 14 14 C -0.35 -7.79 6.88 29.48 0.20 -7.59 14 15 Br -0.07 -1.28 32.20 -68.01 -2.19 -3.47 14 16 S 0.00 0.00 17.04 -107.50 -1.83 -1.83 14 17 H 0.29 6.91 8.73 -40.82 -0.36 6.55 14 18 H 0.11 2.64 8.06 -52.49 -0.42 2.22 14 19 H 0.03 0.52 7.88 -51.93 -0.41 0.11 14 20 H 0.07 1.26 8.05 -51.93 -0.42 0.84 14 21 H 0.34 5.87 7.85 -39.29 -0.31 5.57 14 22 H 0.33 4.45 9.08 -39.29 -0.36 4.09 14 LS Contribution 225.05 15.07 3.39 3.39 Total: -1.00 -25.63 225.05 -7.21 -32.85 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -1.54 Total: 8.01 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -1.48 Total: -23.11 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.65 Total: -32.50 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.21 Total: 16.67 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.83 Total: -1.83 kcal Atomic # 35 Polarization: -1.28 SS G_CDS: -2.19 Total: -3.47 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -25.63 -7.21 -32.85 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365781.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.729 kcal (2) G-P(sol) polarization free energy of solvation -25.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds