Wall clock time and date at job start Mon Mar 30 2020 07:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86801 * 119.99917 * 2 1 4 4 H 1.48503 * 109.47032 * 90.00452 * 3 2 1 5 5 H 1.48497 * 109.47119 * 210.00082 * 3 2 1 6 6 H 1.48501 * 109.47510 * 330.00473 * 3 2 1 7 7 C 1.40040 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00033 * 21.05097 * 7 2 1 9 9 C 1.39881 * 119.99756 * 201.04714 * 7 2 1 10 10 C 1.38304 * 125.39420 * 191.93856 * 9 7 2 11 11 C 1.36755 * 114.21624 * 179.97438 * 10 9 7 12 12 C 1.50701 * 122.34360 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47344 * 104.99831 * 12 11 10 14 14 C 1.34704 * 115.31584 * 0.02562 * 11 10 9 15 15 Br 1.89100 * 124.93655 * 180.02562 * 14 11 10 16 16 S 1.75800 * 110.13011 * 359.75556 * 14 11 10 17 17 H 0.97002 * 120.00110 * 174.66451 * 1 2 3 18 18 H 1.07997 * 122.89474 * 359.96369 * 10 9 7 19 19 H 1.08998 * 109.46994 * 224.99923 * 12 11 10 20 20 H 1.09001 * 109.47170 * 344.99389 * 12 11 10 21 21 H 1.00901 * 111.00349 * 56.05003 * 13 12 11 22 22 H 1.00907 * 111.00129 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4906 2.0464 1.4001 5 1 3.5405 1.4402 -0.7000 6 1 1.4404 2.6528 -0.6999 7 6 2.0092 -1.2128 -0.0005 8 1 1.5232 -2.1167 -0.3369 9 6 3.3380 -1.2533 0.4345 10 6 4.2034 -2.3192 0.2675 11 6 5.4535 -2.1127 0.7821 12 6 6.5407 -3.1530 0.7009 13 7 7.5166 -2.7625 -0.3253 14 6 5.6450 -0.9143 1.3667 15 35 7.2625 -0.3441 2.1632 16 16 4.1751 0.0455 1.2748 17 1 -0.4850 -0.8364 -0.0781 18 1 3.9167 -3.2356 -0.2267 19 1 7.0407 -3.2322 1.6662 20 1 6.1031 -4.1162 0.4384 21 1 7.8894 -1.8436 -0.1388 22 1 8.2566 -3.4445 -0.3988 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260365781.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:52 Heat of formation + Delta-G solvation = -16.101669 kcal Electronic energy + Delta-G solvation = -10336.116936 eV Core-core repulsion = 8254.875618 eV Total energy + Delta-G solvation = -2081.241318 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.83180 -36.34037 -34.46985 -32.34526 -30.62873 -26.55055 -26.00855 -22.34824 -20.85824 -19.33276 -17.85873 -16.63579 -16.31550 -15.62464 -15.45328 -15.14356 -14.04436 -13.88507 -13.64459 -13.08637 -12.77253 -12.51014 -12.36614 -12.12399 -11.59298 -11.29323 -11.14485 -10.60736 -9.79453 -9.60689 -9.39937 -8.93073 -6.68541 0.34612 0.59950 1.11884 1.30717 1.40474 1.56141 1.91377 2.00906 2.07740 2.82193 3.93198 4.19094 4.41946 4.72043 5.03557 5.13701 5.29616 5.44591 5.80994 5.91829 6.15722 6.21992 6.37866 6.65281 7.63448 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.035334 B = 0.009572 C = 0.007971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.249379 B = 2924.517983 C = 3511.851400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.025 3.975 3 Si 0.991 3.009 4 H -0.225 1.225 5 H -0.225 1.225 6 H -0.221 1.221 7 C -0.460 4.460 8 H 0.080 0.920 9 C 0.037 3.963 10 C -0.355 4.355 11 C 0.018 3.982 12 C 0.122 3.878 13 N -0.846 5.846 14 C -0.348 4.348 15 Br -0.026 7.026 16 S -0.001 6.001 17 H 0.293 0.707 18 H 0.110 0.890 19 H 0.043 0.957 20 H 0.079 0.921 21 H 0.343 0.657 22 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.077 0.474 2.709 11.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.198 4.198 3 Si 0.808 3.192 4 H -0.150 1.150 5 H -0.149 1.149 6 H -0.145 1.145 7 C -0.496 4.496 8 H 0.098 0.902 9 C -0.083 4.083 10 C -0.379 4.379 11 C 0.005 3.995 12 C -0.010 4.010 13 N -0.378 5.378 14 C -0.540 4.540 15 Br 0.056 6.944 16 S 0.254 5.746 17 H 0.105 0.895 18 H 0.128 0.872 19 H 0.061 0.939 20 H 0.097 0.903 21 H 0.156 0.844 22 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.438 3.569 3.032 11.440 hybrid contribution 0.269 -3.514 0.033 3.524 sum 10.707 0.055 3.065 11.137 Atomic orbital electron populations 1.70600 1.08178 1.33922 1.28157 1.28286 0.95838 1.06038 0.89590 0.84114 0.78282 0.73376 0.83452 1.14951 1.14876 1.14463 1.20291 0.95630 0.97919 1.35734 0.90165 1.21953 0.96009 0.95003 0.95326 1.19697 0.94257 1.02412 1.21573 1.18327 0.94876 0.93033 0.93265 1.20399 0.91129 0.95772 0.93731 1.58639 1.20546 1.08014 1.50598 1.24794 0.97234 1.02623 1.29349 1.96253 1.26419 1.90249 1.81446 1.83720 1.06737 1.21566 1.62605 0.89514 0.87177 0.93887 0.90303 0.84410 0.83296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.12 13.66 21.85 0.30 -38.82 14 2 C 0.03 1.26 5.50 85.27 0.47 1.72 14 3 Si 0.99 41.25 24.77 68.60 1.70 42.95 14 4 H -0.22 -8.93 6.85 99.48 0.68 -8.25 14 5 H -0.23 -9.43 6.54 99.48 0.65 -8.78 14 6 H -0.22 -8.34 7.11 99.48 0.71 -7.63 14 7 C -0.46 -23.94 9.62 23.11 0.22 -23.72 14 8 H 0.08 4.30 8.06 -2.91 -0.02 4.27 14 9 C 0.04 1.87 5.81 22.68 0.13 2.00 14 10 C -0.35 -17.18 9.93 21.94 0.22 -16.96 14 11 C 0.02 0.77 5.31 -21.02 -0.11 0.66 14 12 C 0.12 4.20 6.53 85.56 0.56 4.76 14 13 N -0.85 -26.02 9.61 -190.02 -1.83 -27.85 14 14 C -0.35 -14.94 6.88 67.01 0.46 -14.48 14 15 Br -0.03 -0.89 32.20 -20.37 -0.66 -1.55 14 16 S 0.00 -0.06 17.04 -56.49 -0.96 -1.02 14 17 H 0.29 14.12 8.73 -92.71 -0.81 13.31 14 18 H 0.11 5.24 8.06 -2.91 -0.02 5.22 14 19 H 0.04 1.37 7.88 -2.39 -0.02 1.35 14 20 H 0.08 2.59 8.05 -2.39 -0.02 2.58 14 21 H 0.34 10.66 7.85 -89.69 -0.70 9.95 14 22 H 0.35 8.29 9.08 -89.69 -0.81 7.47 14 Total: -1.00 -52.94 225.05 0.13 -52.81 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -0.37 Total: 19.49 kcal Atomic # 6 Polarization: -47.96 SS G_CDS: 1.95 Total: -46.01 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -1.53 Total: -66.67 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.70 Total: 42.95 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -0.96 Total: -1.02 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -0.66 Total: -1.55 kcal Total: -52.94 0.13 -52.81 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365781.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.712 kcal (2) G-P(sol) polarization free energy of solvation -52.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds