Wall clock time and date at job start Mon Mar 30 2020 07:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00164 * 2 1 4 4 H 1.48502 * 109.47606 * 240.00256 * 3 2 1 5 5 H 1.48510 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47198 * 120.00082 * 3 2 1 7 7 C 1.37882 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99793 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47017 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47204 * 305.00367 * 10 9 7 12 12 N 1.46905 * 109.47034 * 65.00189 * 10 9 7 13 13 C 1.50698 * 109.47049 * 184.99831 * 10 9 7 14 14 C 1.38225 * 119.99802 * 265.00195 * 13 10 9 15 15 C 1.38423 * 120.02639 * 179.97438 * 14 13 10 16 16 F 1.35092 * 119.99982 * 180.02562 * 15 14 13 17 17 C 1.38468 * 120.00910 * 0.04253 * 15 14 13 18 18 C 1.38258 * 119.98572 * 359.97438 * 17 15 14 19 19 Cl 1.73608 * 120.01124 * 179.97438 * 18 17 15 20 20 C 1.38401 * 119.99272 * 84.72867 * 13 10 9 21 21 F 1.35104 * 120.00315 * 0.02562 * 20 13 10 22 22 H 0.96995 * 119.99589 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46976 * 60.00236 * 9 7 2 24 24 H 1.09003 * 109.47133 * 300.00443 * 9 7 2 25 25 H 1.00901 * 110.99869 * 60.00199 * 12 10 9 26 26 H 1.00896 * 110.99543 * 183.95322 * 12 10 9 27 27 H 1.08001 * 119.98275 * 359.97438 * 14 13 10 28 28 H 1.08006 * 120.00437 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9295 -3.5552 -0.8423 12 7 3.0084 -3.6539 1.2548 13 6 1.4959 -4.9636 -0.1243 14 6 1.1635 -5.6803 1.0099 15 6 0.4746 -6.8756 0.8969 16 9 0.1496 -7.5753 2.0059 17 6 0.1190 -7.3545 -0.3527 18 6 0.4516 -6.6382 -1.4875 19 17 0.0066 -7.2384 -3.0546 20 6 1.1356 -5.4385 -1.3734 21 9 1.4562 -4.7354 -2.4817 22 1 -0.4849 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.3961 -3.7518 2.0508 26 1 3.7160 -4.3731 1.2523 27 1 1.4413 -5.3074 1.9847 28 1 -0.4181 -8.2874 -0.4408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260369078.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:50 Heat of formation + Delta-G solvation = -77.695236 kcal Electronic energy + Delta-G solvation = -17088.031019 eV Core-core repulsion = 13800.539197 eV Total energy + Delta-G solvation = -3287.491822 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.05947 -48.77483 -39.29316 -36.89409 -35.39464 -32.55437 -30.29102 -30.05893 -28.37427 -24.96473 -22.88882 -22.51247 -20.14736 -17.89509 -17.44396 -17.24082 -16.31673 -15.91506 -15.36755 -15.30305 -14.88624 -14.43156 -14.31602 -14.06386 -13.81566 -12.94672 -12.86574 -12.44438 -12.28226 -11.55149 -11.45767 -11.22809 -11.10466 -10.84407 -10.60957 -10.38307 -9.77507 -9.18645 -8.87461 -8.49360 -8.34168 -8.22342 -5.95819 -3.95411 0.74487 0.86900 1.79689 3.17407 3.38780 3.42338 3.45930 4.02916 4.05887 4.47048 4.56460 4.70055 4.91822 5.09854 5.28820 5.42294 5.59500 5.78297 5.81838 5.92942 6.16924 6.51176 6.66768 7.39362 7.56401 7.79333 7.96073 8.03594 8.43021 9.09619 9.66898 11.15971 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.024151 B = 0.005862 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.111464 B = 4775.256362 C = 5442.781894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.497 4.497 8 H 0.064 0.936 9 C 0.038 3.962 10 C 0.133 3.867 11 H 0.092 0.908 12 N -0.817 5.817 13 C -0.091 4.091 14 C -0.130 4.130 15 C 0.105 3.895 16 F -0.132 7.132 17 C -0.136 4.136 18 C -0.046 4.046 19 Cl -0.044 7.044 20 C 0.109 3.891 21 F -0.114 7.114 22 H 0.260 0.740 23 H 0.023 0.977 24 H 0.019 0.981 25 H 0.337 0.663 26 H 0.326 0.674 27 H 0.148 0.852 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.049 -15.825 -0.539 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.148 4.148 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.535 4.535 8 H 0.082 0.918 9 C 0.001 3.999 10 C 0.021 3.979 11 H 0.110 0.890 12 N -0.345 5.345 13 C -0.094 4.094 14 C -0.149 4.149 15 C 0.085 3.915 16 F -0.110 7.110 17 C -0.156 4.156 18 C -0.074 4.074 19 Cl -0.015 7.015 20 C 0.088 3.912 21 F -0.092 7.092 22 H 0.069 0.931 23 H 0.041 0.959 24 H 0.037 0.963 25 H 0.151 0.849 26 H 0.138 0.862 27 H 0.166 0.834 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.090 -14.989 -0.878 15.054 hybrid contribution -0.195 -0.201 -0.004 0.280 sum 0.894 -15.189 -0.882 15.241 Atomic orbital electron populations 1.69957 1.06046 1.26660 1.51456 1.25013 0.94823 0.99250 0.95679 0.86605 0.79440 0.83006 0.78591 1.20344 1.21569 1.20269 1.21041 0.93365 0.89745 1.49394 0.91817 1.19160 0.92696 0.90428 0.97637 1.20938 0.95134 0.88680 0.93164 0.89022 1.58773 1.17634 1.54415 1.03645 1.21497 0.98474 0.99395 0.90070 1.20957 1.00083 0.93677 1.00185 1.17329 1.00028 0.91828 0.82279 1.91520 1.90793 1.78038 1.50687 1.20699 1.03640 1.01987 0.89239 1.20655 1.03143 0.95311 0.88248 1.98387 1.91319 1.87310 1.24508 1.17232 1.00172 0.90054 0.83780 1.91579 1.90256 1.77389 1.49962 0.93063 0.95865 0.96267 0.84891 0.86233 0.83439 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.13 15 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 15 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.79 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.50 -13.68 8.84 -34.44 -0.30 -13.99 15 8 H 0.06 1.74 7.74 -52.48 -0.41 1.33 15 9 C 0.04 0.94 4.60 -27.89 -0.13 0.81 15 10 C 0.13 2.54 2.70 -68.86 -0.19 2.35 15 11 H 0.09 1.82 7.80 -51.93 -0.40 1.42 15 12 N -0.82 -13.72 8.54 -5.65 -0.05 -13.77 15 13 C -0.09 -1.48 5.05 -104.57 -0.53 -2.01 15 14 C -0.13 -1.82 9.25 -39.52 -0.37 -2.18 15 15 C 0.11 1.37 7.30 -39.43 -0.29 1.08 15 16 F -0.13 -1.67 17.27 2.25 0.04 -1.63 15 17 C -0.14 -1.68 9.81 -39.49 -0.39 -2.07 15 18 C -0.05 -0.64 6.32 -39.45 -0.25 -0.89 15 19 Cl -0.04 -0.57 28.62 -51.86 -1.48 -2.05 15 20 C 0.11 1.78 7.22 -39.40 -0.28 1.49 15 21 F -0.11 -2.04 16.14 2.25 0.04 -2.01 15 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 23 H 0.02 0.62 8.14 -51.93 -0.42 0.20 15 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15 25 H 0.34 5.27 7.21 -39.29 -0.28 4.99 15 26 H 0.33 4.45 9.06 -39.29 -0.36 4.09 15 27 H 0.15 1.84 6.29 -52.49 -0.33 1.51 15 28 H 0.15 1.47 8.06 -52.48 -0.42 1.05 15 LS Contribution 272.00 15.07 4.10 4.10 Total: -1.00 -29.49 272.00 -6.64 -36.13 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -2.18 Total: 2.57 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -2.82 Total: -14.00 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.69 Total: -39.90 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.08 Total: -3.64 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.49 -6.64 -36.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260369078.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.561 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds