Wall clock time and date at job start Mon Mar 30 2020 07:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00164 * 2 1 4 4 H 1.48502 * 109.47606 * 240.00256 * 3 2 1 5 5 H 1.48510 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47198 * 120.00082 * 3 2 1 7 7 C 1.37882 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99793 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47017 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47204 * 305.00367 * 10 9 7 12 12 N 1.46905 * 109.47034 * 65.00189 * 10 9 7 13 13 C 1.50698 * 109.47049 * 184.99831 * 10 9 7 14 14 C 1.38225 * 119.99802 * 265.00195 * 13 10 9 15 15 C 1.38423 * 120.02639 * 179.97438 * 14 13 10 16 16 F 1.35092 * 119.99982 * 180.02562 * 15 14 13 17 17 C 1.38468 * 120.00910 * 0.04253 * 15 14 13 18 18 C 1.38258 * 119.98572 * 359.97438 * 17 15 14 19 19 Cl 1.73608 * 120.01124 * 179.97438 * 18 17 15 20 20 C 1.38401 * 119.99272 * 84.72867 * 13 10 9 21 21 F 1.35104 * 120.00315 * 0.02562 * 20 13 10 22 22 H 0.96995 * 119.99589 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46976 * 60.00236 * 9 7 2 24 24 H 1.09003 * 109.47133 * 300.00443 * 9 7 2 25 25 H 1.00901 * 110.99869 * 60.00199 * 12 10 9 26 26 H 1.00896 * 110.99543 * 183.95322 * 12 10 9 27 27 H 1.08001 * 119.98275 * 359.97438 * 14 13 10 28 28 H 1.08006 * 120.00437 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9295 -3.5552 -0.8423 12 7 3.0084 -3.6539 1.2548 13 6 1.4959 -4.9636 -0.1243 14 6 1.1635 -5.6803 1.0099 15 6 0.4746 -6.8756 0.8969 16 9 0.1496 -7.5753 2.0059 17 6 0.1190 -7.3545 -0.3527 18 6 0.4516 -6.6382 -1.4875 19 17 0.0066 -7.2384 -3.0546 20 6 1.1356 -5.4385 -1.3734 21 9 1.4562 -4.7354 -2.4817 22 1 -0.4849 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.3961 -3.7518 2.0508 26 1 3.7160 -4.3731 1.2523 27 1 1.4413 -5.3074 1.9847 28 1 -0.4181 -8.2874 -0.4408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260369078.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:50 Heat of formation + Delta-G solvation = -95.895435 kcal Electronic energy + Delta-G solvation = -17088.820239 eV Core-core repulsion = 13800.539197 eV Total energy + Delta-G solvation = -3288.281042 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.10000 -50.08624 -40.49388 -38.03831 -36.81114 -34.58777 -31.50749 -31.25893 -30.20157 -26.60819 -24.39350 -23.80798 -21.67262 -19.14809 -18.67044 -18.49927 -18.15637 -17.17666 -16.80770 -16.51196 -16.32920 -16.01520 -15.53177 -15.46756 -15.01487 -14.31796 -14.22958 -13.96751 -13.83683 -13.25594 -12.83830 -12.77977 -12.47360 -12.38203 -12.23157 -12.19790 -11.54337 -11.26851 -10.51616 -10.09884 -9.70049 -9.58912 -8.12845 -6.19195 -0.38562 -0.27587 0.71276 1.43981 1.46600 1.54091 2.02751 2.47075 2.88485 2.94044 3.21030 3.33406 3.62725 3.76767 3.80887 4.12219 4.41866 4.46146 4.68680 4.71919 4.74837 4.95407 5.41337 5.44563 5.60594 5.84457 6.23287 6.40113 6.75443 6.93854 7.47536 8.99010 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.024151 B = 0.005862 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.111464 B = 4775.256362 C = 5442.781894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.003 4.003 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.045 3.955 10 C 0.149 3.851 11 H 0.078 0.922 12 N -0.823 5.823 13 C -0.106 4.106 14 C -0.124 4.124 15 C 0.112 3.888 16 F -0.125 7.125 17 C -0.117 4.117 18 C -0.047 4.047 19 Cl -0.033 7.033 20 C 0.087 3.913 21 F -0.131 7.131 22 H 0.260 0.740 23 H -0.010 1.010 24 H -0.001 1.001 25 H 0.344 0.656 26 H 0.347 0.653 27 H 0.163 0.837 28 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 -17.045 0.110 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.200 4.200 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.008 3.992 10 C 0.037 3.963 11 H 0.096 0.904 12 N -0.354 5.354 13 C -0.110 4.110 14 C -0.143 4.143 15 C 0.092 3.908 16 F -0.103 7.103 17 C -0.136 4.136 18 C -0.075 4.075 19 Cl -0.003 7.003 20 C 0.066 3.934 21 F -0.110 7.110 22 H 0.069 0.931 23 H 0.009 0.991 24 H 0.017 0.983 25 H 0.159 0.841 26 H 0.161 0.839 27 H 0.180 0.820 28 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.587 -16.232 -0.225 16.311 hybrid contribution -0.381 0.070 -0.197 0.435 sum 1.206 -16.162 -0.421 16.212 Atomic orbital electron populations 1.70090 1.07631 1.27464 1.52764 1.25883 0.95643 1.03000 0.95458 0.85562 0.78196 0.78616 0.78985 1.19582 1.21333 1.19337 1.21422 0.93545 0.91157 1.48518 0.91850 1.18935 0.93117 0.92187 0.94975 1.20318 0.93911 0.88264 0.93834 0.90372 1.58626 1.18079 1.55796 1.02872 1.21116 0.99938 0.98913 0.91053 1.21063 0.99471 0.93765 0.99964 1.17272 0.99430 0.91361 0.82717 1.91548 1.90616 1.77741 1.50401 1.21020 1.02020 1.02402 0.88169 1.20686 1.02756 0.94667 0.89410 1.98392 1.91118 1.86954 1.23880 1.17514 1.01431 0.91115 0.83360 1.91527 1.90632 1.78023 1.50781 0.93112 0.99123 0.98309 0.84083 0.83877 0.82005 0.79942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.11 13.29 21.45 0.28 -56.82 15 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 15 3 Si 0.96 44.95 29.54 68.60 2.03 46.98 15 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 15 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 7 C -0.51 -28.44 8.84 25.60 0.23 -28.21 15 8 H 0.06 3.48 7.74 -2.91 -0.02 3.45 15 9 C 0.05 2.30 4.60 29.85 0.14 2.44 15 10 C 0.15 5.76 2.70 44.17 0.12 5.88 15 11 H 0.08 3.19 7.80 -2.39 -0.02 3.17 15 12 N -0.82 -27.03 8.54 -171.80 -1.47 -28.49 15 13 C -0.11 -3.44 5.05 -19.83 -0.10 -3.54 15 14 C -0.12 -3.25 9.25 22.31 0.21 -3.05 15 15 C 0.11 2.61 7.30 22.37 0.16 2.78 15 16 F -0.12 -2.76 17.27 44.97 0.78 -1.98 15 17 C -0.12 -2.55 9.81 22.33 0.22 -2.33 15 18 C -0.05 -1.25 6.32 22.36 0.14 -1.11 15 19 Cl -0.03 -0.79 28.62 -2.72 -0.08 -0.86 15 20 C 0.09 2.82 7.22 22.39 0.16 2.98 15 21 F -0.13 -4.85 16.14 44.97 0.73 -4.12 15 22 H 0.26 15.05 8.31 -92.71 -0.77 14.28 15 23 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 15 24 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 15 25 H 0.34 10.42 7.21 -89.69 -0.65 9.77 15 26 H 0.35 8.95 9.06 -89.70 -0.81 8.14 15 27 H 0.16 3.71 6.29 -2.91 -0.02 3.69 15 28 H 0.18 2.80 8.06 -2.91 -0.02 2.78 15 Total: -1.00 -63.81 272.00 3.77 -60.04 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -0.23 Total: 9.15 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 1.74 Total: -23.88 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -1.18 Total: -85.32 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 1.50 Total: -6.10 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.86 kcal Total: -63.81 3.77 -60.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260369078.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.856 kcal (2) G-P(sol) polarization free energy of solvation -63.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds