Wall clock time and date at job start Mon Mar 30 2020 07:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.46976 * 54.99550 * 10 9 7 12 12 N 1.46900 * 109.46648 * 294.99361 * 10 9 7 13 13 C 1.50696 * 109.46626 * 174.99629 * 10 9 7 14 14 C 1.38226 * 119.99324 * 99.72637 * 13 10 9 15 15 C 1.38435 * 120.02481 * 179.76623 * 14 13 10 16 16 F 1.35096 * 119.99557 * 180.25461 * 15 14 13 17 17 C 1.38465 * 120.00692 * 0.50099 * 15 14 13 18 18 C 1.38264 * 119.98596 * 359.75179 * 17 15 14 19 19 Cl 1.73605 * 120.00734 * 180.02562 * 18 17 15 20 20 C 1.38392 * 119.99462 * 279.99331 * 13 10 9 21 21 F 1.35096 * 120.00668 * 359.96037 * 20 13 10 22 22 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 24 24 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 25 25 H 1.00907 * 110.99730 * 176.04632 * 12 10 9 26 26 H 1.00901 * 111.00161 * 300.00008 * 12 10 9 27 27 H 1.08000 * 119.98828 * 359.97438 * 14 13 10 28 28 H 1.08001 * 120.00364 * 179.76573 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 1 2.9326 -3.5570 0.8273 12 7 3.0036 -3.6511 -1.2703 13 6 1.4964 -4.9639 0.1117 14 6 1.2453 -5.7263 -1.0136 15 6 0.5616 -6.9247 -0.9000 16 9 0.3210 -7.6719 -1.9995 17 6 0.1198 -7.3550 0.3397 18 6 0.3661 -6.5901 1.4649 19 17 -0.1869 -7.1294 3.0196 20 6 1.0552 -5.3931 1.3512 21 9 1.2967 -4.6455 2.4503 22 1 -0.4850 -0.8400 0.0004 23 1 0.6281 -2.5591 0.8866 24 1 0.6207 -2.5548 -0.8933 25 1 3.7114 -4.3703 -1.2722 26 1 2.3883 -3.7472 -2.0642 27 1 1.5856 -5.3887 -1.9814 28 1 -0.4169 -8.2881 0.4278 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260369084.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:57 Heat of formation + Delta-G solvation = -99.692593 kcal Electronic energy + Delta-G solvation = -17140.568398 eV Core-core repulsion = 13852.122699 eV Total energy + Delta-G solvation = -3288.445699 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -50.17061 -50.15566 -40.58771 -38.12589 -36.97906 -34.83009 -31.54358 -31.35248 -29.94024 -26.40833 -24.48336 -23.89651 -21.93090 -19.23280 -18.87620 -18.63921 -18.44719 -17.20275 -16.80771 -16.57700 -16.10946 -15.81269 -15.67807 -15.57454 -15.19557 -14.69566 -14.07312 -14.05144 -13.75480 -13.66515 -12.84846 -12.65670 -12.55154 -12.37277 -12.28395 -11.94301 -11.81087 -10.76637 -10.50172 -10.15745 -9.77262 -9.67963 -8.59704 -6.27003 -0.46070 -0.35514 0.65296 1.55670 1.64808 1.82625 1.95147 2.61297 2.81084 2.86521 3.22935 3.24512 3.55152 3.66582 3.71966 4.03873 4.29160 4.38606 4.53343 4.64594 4.65873 4.81484 5.10930 5.33589 5.40572 6.02761 6.23629 6.30533 6.61803 6.70282 7.50865 8.80986 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.024159 B = 0.005937 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.725324 B = 4714.930135 C = 5418.986940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.044 4.044 3 Si 1.119 2.881 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.286 1.286 7 C -0.583 4.583 8 H 0.055 0.945 9 C 0.029 3.971 10 C 0.157 3.843 11 H 0.077 0.923 12 N -0.823 5.823 13 C -0.110 4.110 14 C -0.124 4.124 15 C 0.114 3.886 16 F -0.123 7.123 17 C -0.115 4.115 18 C -0.047 4.047 19 Cl -0.031 7.031 20 C 0.086 3.914 21 F -0.132 7.132 22 H 0.252 0.748 23 H -0.013 1.013 24 H -0.007 1.007 25 H 0.349 0.651 26 H 0.344 0.656 27 H 0.163 0.837 28 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 -17.514 -0.142 17.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.240 4.240 3 Si 0.941 3.059 4 H -0.203 1.203 5 H -0.194 1.194 6 H -0.212 1.212 7 C -0.621 4.621 8 H 0.073 0.927 9 C -0.008 4.008 10 C 0.044 3.956 11 H 0.095 0.905 12 N -0.354 5.354 13 C -0.114 4.114 14 C -0.143 4.143 15 C 0.094 3.906 16 F -0.102 7.102 17 C -0.134 4.134 18 C -0.075 4.075 19 Cl -0.002 7.002 20 C 0.065 3.935 21 F -0.110 7.110 22 H 0.061 0.939 23 H 0.005 0.995 24 H 0.012 0.988 25 H 0.163 0.837 26 H 0.159 0.841 27 H 0.181 0.819 28 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.034 -15.188 0.189 15.325 hybrid contribution -0.601 -2.567 0.212 2.645 sum 1.433 -17.756 0.401 17.818 Atomic orbital electron populations 1.70905 1.07985 1.29529 1.50011 1.27304 0.96574 1.06700 0.93434 0.82898 0.74236 0.71286 0.77462 1.20262 1.19421 1.21176 1.22260 0.94760 0.92192 1.52870 0.92680 1.19102 0.93820 0.93743 0.94157 1.20140 0.93672 0.87932 0.93852 0.90465 1.58582 1.18102 1.55963 1.02751 1.21103 0.99971 0.99026 0.91276 1.21074 0.99997 0.93411 0.99855 1.17261 0.99704 0.90560 0.83072 1.91557 1.92417 1.75115 1.51076 1.21046 1.01846 1.02188 0.88361 1.20698 1.02226 0.94714 0.89829 1.98396 1.87773 1.89091 1.24923 1.17527 1.01729 0.90564 0.83698 1.91529 1.92341 1.75645 1.51533 0.93875 0.99483 0.98837 0.83676 0.84067 0.81921 0.79787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.32 13.65 21.45 0.29 -59.03 15 2 C -0.04 -2.57 5.46 84.65 0.46 -2.11 15 3 Si 1.12 51.50 29.90 68.60 2.05 53.55 15 4 H -0.28 -12.09 7.11 99.48 0.71 -11.38 15 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 6 H -0.29 -13.07 7.11 99.48 0.71 -12.36 15 7 C -0.58 -33.02 8.84 25.60 0.23 -32.80 15 8 H 0.05 3.10 7.74 -2.91 -0.02 3.08 15 9 C 0.03 1.48 3.91 29.85 0.12 1.59 15 10 C 0.16 6.09 2.64 44.17 0.12 6.21 15 11 H 0.08 3.21 7.94 -2.39 -0.02 3.19 15 12 N -0.82 -27.33 8.43 -171.81 -1.45 -28.78 15 13 C -0.11 -3.54 5.08 -19.83 -0.10 -3.64 15 14 C -0.12 -3.21 9.23 22.31 0.21 -3.00 15 15 C 0.11 2.59 7.30 22.37 0.16 2.76 15 16 F -0.12 -2.64 17.27 44.97 0.78 -1.87 15 17 C -0.12 -2.46 9.81 22.33 0.22 -2.24 15 18 C -0.05 -1.23 6.32 22.36 0.14 -1.09 15 19 Cl -0.03 -0.74 28.62 -2.72 -0.08 -0.82 15 20 C 0.09 2.79 7.21 22.39 0.16 2.95 15 21 F -0.13 -4.95 16.23 44.97 0.73 -4.22 15 22 H 0.25 16.01 7.22 -92.71 -0.67 15.34 15 23 H -0.01 -0.73 8.01 -2.39 -0.02 -0.75 15 24 H -0.01 -0.35 8.00 -2.39 -0.02 -0.37 15 25 H 0.35 9.06 9.06 -89.69 -0.81 8.24 15 26 H 0.34 10.52 7.28 -89.69 -0.65 9.87 15 27 H 0.16 3.62 6.25 -2.91 -0.02 3.60 15 28 H 0.18 2.73 8.06 -2.91 -0.02 2.70 15 Total: -1.00 -66.04 270.79 3.90 -62.14 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -0.14 Total: 10.39 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 1.71 Total: -31.37 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -1.16 Total: -87.81 kcal Atomic # 9 Polarization: -7.59 SS G_CDS: 1.51 Total: -6.08 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.55 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -66.04 3.90 -62.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260369084.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.556 kcal (2) G-P(sol) polarization free energy of solvation -66.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds