Wall clock time and date at job start Mon Mar 30 2020 07:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 N 1.46904 * 109.47449 * 295.00105 * 10 9 7 13 13 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 14 14 C 1.38237 * 119.98354 * 99.71955 * 13 10 9 15 15 C 1.38198 * 120.07038 * 179.72869 * 14 13 10 16 16 C 1.38474 * 120.03493 * 0.55670 * 15 14 13 17 17 F 1.35103 * 120.01721 * 179.70117 * 16 15 14 18 18 C 1.38493 * 119.96444 * 359.72241 * 16 15 14 19 19 Cl 1.73599 * 120.03626 * 179.97438 * 18 16 15 20 20 C 1.38431 * 119.98220 * 280.00784 * 13 10 9 21 21 F 1.35104 * 120.01662 * 0.02562 * 20 13 10 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.00898 * 111.00551 * 176.04613 * 12 10 9 26 26 H 1.00898 * 110.99372 * 300.00401 * 12 10 9 27 27 H 1.08001 * 119.96418 * 0.02562 * 14 13 10 28 28 H 1.08000 * 119.98283 * 180.25414 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 7 3.0083 -3.6540 -1.2547 13 6 1.4958 -4.9637 0.1244 14 6 1.2489 -5.7285 -1.0004 15 6 0.5668 -6.9252 -0.8881 16 6 0.1194 -7.3544 0.3501 17 9 -0.5526 -8.5214 0.4586 18 6 0.3609 -6.5866 1.4771 19 17 -0.1997 -7.1226 3.0302 20 6 1.0498 -5.3900 1.3636 21 9 1.2857 -4.6392 2.4618 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 3.7159 -4.3732 -1.2524 26 1 2.3959 -3.7518 -2.0507 27 1 1.5937 -5.3928 -1.9673 28 1 0.3784 -7.5235 -1.7672 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260841182.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:18 Heat of formation + Delta-G solvation = -75.473238 kcal Electronic energy + Delta-G solvation = -17115.234787 eV Core-core repulsion = 13827.839318 eV Total energy + Delta-G solvation = -3287.395469 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -49.10180 -48.81720 -39.28905 -36.83111 -35.34765 -32.51908 -30.73238 -29.71027 -28.37465 -24.71546 -23.08113 -22.49235 -20.09325 -18.32299 -17.45215 -16.67084 -16.14646 -16.01146 -15.44982 -15.29372 -15.18673 -14.53851 -14.48545 -14.29450 -13.37310 -12.70145 -12.68737 -12.43902 -12.14515 -11.70107 -11.64057 -11.19787 -11.09035 -10.85672 -10.58228 -10.37646 -9.71488 -9.16216 -8.89293 -8.46640 -8.33995 -8.21102 -5.95582 -3.95018 0.75439 0.87981 1.83630 3.20873 3.36985 3.42899 3.47216 3.69076 4.31716 4.48940 4.51810 4.67029 4.91489 5.16076 5.40665 5.43081 5.54666 5.82116 5.85999 5.96333 6.20043 6.51257 6.68588 7.40592 7.57551 7.80695 7.96825 8.04087 8.43961 9.10443 9.67353 11.16230 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.030626 B = 0.005526 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.039521 B = 5065.752634 C = 5523.082562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.052 3.948 3 Si 0.895 3.105 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.496 4.496 8 H 0.064 0.936 9 C 0.037 3.963 10 C 0.134 3.866 11 H 0.089 0.911 12 N -0.818 5.818 13 C -0.129 4.129 14 C -0.070 4.070 15 C -0.148 4.148 16 C 0.119 3.881 17 F -0.125 7.125 18 C -0.114 4.114 19 Cl -0.038 7.038 20 C 0.146 3.854 21 F -0.109 7.109 22 H 0.259 0.741 23 H 0.023 0.977 24 H 0.018 0.982 25 H 0.326 0.674 26 H 0.336 0.664 27 H 0.146 0.854 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 -15.529 -0.629 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.148 4.148 3 Si 0.723 3.277 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.534 4.534 8 H 0.082 0.918 9 C 0.000 4.000 10 C 0.022 3.978 11 H 0.107 0.893 12 N -0.346 5.346 13 C -0.132 4.132 14 C -0.088 4.088 15 C -0.167 4.167 16 C 0.099 3.901 17 F -0.104 7.104 18 C -0.142 4.142 19 Cl -0.009 7.009 20 C 0.125 3.875 21 F -0.087 7.087 22 H 0.069 0.931 23 H 0.041 0.959 24 H 0.037 0.963 25 H 0.137 0.863 26 H 0.151 0.849 27 H 0.163 0.837 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.428 -14.708 -0.233 14.779 hybrid contribution -0.291 -0.241 0.259 0.458 sum 1.137 -14.949 0.026 14.992 Atomic orbital electron populations 1.69965 1.06047 1.26520 1.51589 1.25015 0.94817 0.99253 0.95728 0.86549 0.79768 0.83412 0.77958 1.20818 1.21526 1.19912 1.21089 0.93389 0.89789 1.49181 0.91796 1.19163 0.92737 0.90518 0.97599 1.20870 0.95043 0.88886 0.92975 0.89290 1.58752 1.17653 1.54465 1.03691 1.21721 1.00387 1.00408 0.90729 1.20848 0.96584 0.92603 0.98796 1.21098 1.01344 0.98477 0.95798 1.16994 0.97117 0.83433 0.92585 1.91534 1.77524 1.44553 1.96761 1.21006 1.07310 0.97459 0.88470 1.98384 1.87876 1.89520 1.25117 1.16945 0.98150 0.88203 0.84164 1.91596 1.91817 1.74461 1.50864 0.93137 0.95885 0.96323 0.86262 0.84904 0.83657 0.83434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.29 55.43 0.74 -26.12 15 2 C 0.05 1.47 5.46 -17.82 -0.10 1.38 15 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 15 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.50 -13.62 8.84 -34.44 -0.30 -13.93 15 8 H 0.06 1.75 7.74 -52.49 -0.41 1.34 15 9 C 0.04 0.91 4.60 -27.88 -0.13 0.78 15 10 C 0.13 2.53 2.64 -68.86 -0.18 2.35 15 11 H 0.09 1.77 7.94 -51.92 -0.41 1.35 15 12 N -0.82 -13.30 8.43 -5.65 -0.05 -13.35 15 13 C -0.13 -2.06 5.08 -104.55 -0.53 -2.59 15 14 C -0.07 -0.89 9.25 -39.60 -0.37 -1.25 15 15 C -0.15 -1.71 10.02 -39.51 -0.40 -2.11 15 16 C 0.12 1.60 7.27 -39.40 -0.29 1.32 15 17 F -0.13 -1.66 16.84 2.25 0.04 -1.62 15 18 C -0.11 -1.72 6.33 -39.38 -0.25 -1.97 15 19 Cl -0.04 -0.55 28.28 -51.86 -1.47 -2.01 15 20 C 0.15 2.45 7.21 -39.40 -0.28 2.16 15 21 F -0.11 -2.02 16.23 2.25 0.04 -1.98 15 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 23 H 0.02 0.62 8.14 -51.93 -0.42 0.20 15 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 25 H 0.33 4.24 9.06 -39.29 -0.36 3.88 15 26 H 0.34 5.01 7.28 -39.29 -0.29 4.72 15 27 H 0.15 1.51 6.24 -52.49 -0.33 1.18 15 28 H 0.15 1.25 8.06 -52.49 -0.42 0.83 15 LS Contribution 271.56 15.07 4.09 4.09 Total: -1.00 -30.03 271.56 -6.65 -36.68 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -2.19 Total: 1.41 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -2.83 Total: -13.87 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.69 Total: -39.46 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.07 Total: -3.60 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.47 Total: -2.01 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.03 -6.65 -36.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260841182.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.793 kcal (2) G-P(sol) polarization free energy of solvation -30.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds