Wall clock time and date at job start Mon Mar 30 2020 07:46:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86797 * 120.00353 * 2 1
4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1
5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1
6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1
7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2
11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7
12 12 N 1.46904 * 109.47449 * 295.00105 * 10 9 7
13 13 C 1.50698 * 109.47721 * 174.99887 * 10 9 7
14 14 C 1.38237 * 119.98354 * 99.71955 * 13 10 9
15 15 C 1.38198 * 120.07038 * 179.72869 * 14 13 10
16 16 C 1.38474 * 120.03493 * 0.55670 * 15 14 13
17 17 F 1.35103 * 120.01721 * 179.70117 * 16 15 14
18 18 C 1.38493 * 119.96444 * 359.72241 * 16 15 14
19 19 Cl 1.73599 * 120.03626 * 179.97438 * 18 16 15
20 20 C 1.38431 * 119.98220 * 280.00784 * 13 10 9
21 21 F 1.35104 * 120.01662 * 0.02562 * 20 13 10
22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3
23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2
24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2
25 25 H 1.00898 * 111.00551 * 176.04613 * 12 10 9
26 26 H 1.00898 * 110.99372 * 300.00401 * 12 10 9
27 27 H 1.08001 * 119.96418 * 0.02562 * 14 13 10
28 28 H 1.08000 * 119.98283 * 180.25414 * 15 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4467 2.6527 0.7000
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0005
11 1 2.9293 -3.5552 0.8424
12 7 3.0083 -3.6540 -1.2547
13 6 1.4958 -4.9637 0.1244
14 6 1.2489 -5.7285 -1.0004
15 6 0.5668 -6.9252 -0.8881
16 6 0.1194 -7.3544 0.3501
17 9 -0.5526 -8.5214 0.4586
18 6 0.3609 -6.5866 1.4771
19 17 -0.1997 -7.1226 3.0302
20 6 1.0498 -5.3900 1.3636
21 9 1.2857 -4.6392 2.4618
22 1 -0.4850 0.8401 0.0004
23 1 0.6239 -2.5567 0.8903
24 1 0.6246 -2.5571 -0.8897
25 1 3.7159 -4.3732 -1.2524
26 1 2.3959 -3.7518 -2.0507
27 1 1.5937 -5.3928 -1.9673
28 1 0.3784 -7.5235 -1.7672
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260841182.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:46:18
Heat of formation + Delta-G solvation = -75.473238 kcal
Electronic energy + Delta-G solvation = -17115.234787 eV
Core-core repulsion = 13827.839318 eV
Total energy + Delta-G solvation = -3287.395469 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 261.043 amu
Computer time = 2.30 seconds
Orbital eigenvalues (eV)
-49.10180 -48.81720 -39.28905 -36.83111 -35.34765 -32.51908 -30.73238 -29.71027
-28.37465 -24.71546 -23.08113 -22.49235 -20.09325 -18.32299 -17.45215 -16.67084
-16.14646 -16.01146 -15.44982 -15.29372 -15.18673 -14.53851 -14.48545 -14.29450
-13.37310 -12.70145 -12.68737 -12.43902 -12.14515 -11.70107 -11.64057 -11.19787
-11.09035 -10.85672 -10.58228 -10.37646 -9.71488 -9.16216 -8.89293 -8.46640
-8.33995 -8.21102 -5.95582 -3.95018 0.75439 0.87981 1.83630 3.20873
3.36985 3.42899 3.47216 3.69076 4.31716 4.48940 4.51810 4.67029
4.91489 5.16076 5.40665 5.43081 5.54666 5.82116 5.85999 5.96333
6.20043 6.51257 6.68588 7.40592 7.57551 7.80695 7.96825 8.04087
8.43961 9.10443 9.67353 11.16230
Molecular weight = 261.04amu
Principal moments of inertia in cm(-1)
A = 0.030626 B = 0.005526 C = 0.005068
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 914.039521 B = 5065.752634 C = 5523.082562
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.901 5.901
2 C 0.052 3.948
3 Si 0.895 3.105
4 H -0.282 1.282
5 H -0.289 1.289
6 H -0.274 1.274
7 C -0.496 4.496
8 H 0.064 0.936
9 C 0.037 3.963
10 C 0.134 3.866
11 H 0.089 0.911
12 N -0.818 5.818
13 C -0.129 4.129
14 C -0.070 4.070
15 C -0.148 4.148
16 C 0.119 3.881
17 F -0.125 7.125
18 C -0.114 4.114
19 Cl -0.038 7.038
20 C 0.146 3.854
21 F -0.109 7.109
22 H 0.259 0.741
23 H 0.023 0.977
24 H 0.018 0.982
25 H 0.326 0.674
26 H 0.336 0.664
27 H 0.146 0.854
28 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.411 -15.529 -0.629 15.606
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.541 5.541
2 C -0.148 4.148
3 Si 0.723 3.277
4 H -0.208 1.208
5 H -0.215 1.215
6 H -0.199 1.199
7 C -0.534 4.534
8 H 0.082 0.918
9 C 0.000 4.000
10 C 0.022 3.978
11 H 0.107 0.893
12 N -0.346 5.346
13 C -0.132 4.132
14 C -0.088 4.088
15 C -0.167 4.167
16 C 0.099 3.901
17 F -0.104 7.104
18 C -0.142 4.142
19 Cl -0.009 7.009
20 C 0.125 3.875
21 F -0.087 7.087
22 H 0.069 0.931
23 H 0.041 0.959
24 H 0.037 0.963
25 H 0.137 0.863
26 H 0.151 0.849
27 H 0.163 0.837
28 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges 1.428 -14.708 -0.233 14.779
hybrid contribution -0.291 -0.241 0.259 0.458
sum 1.137 -14.949 0.026 14.992
Atomic orbital electron populations
1.69965 1.06047 1.26520 1.51589 1.25015 0.94817 0.99253 0.95728
0.86549 0.79768 0.83412 0.77958 1.20818 1.21526 1.19912 1.21089
0.93389 0.89789 1.49181 0.91796 1.19163 0.92737 0.90518 0.97599
1.20870 0.95043 0.88886 0.92975 0.89290 1.58752 1.17653 1.54465
1.03691 1.21721 1.00387 1.00408 0.90729 1.20848 0.96584 0.92603
0.98796 1.21098 1.01344 0.98477 0.95798 1.16994 0.97117 0.83433
0.92585 1.91534 1.77524 1.44553 1.96761 1.21006 1.07310 0.97459
0.88470 1.98384 1.87876 1.89520 1.25117 1.16945 0.98150 0.88203
0.84164 1.91596 1.91817 1.74461 1.50864 0.93137 0.95885 0.96323
0.86262 0.84904 0.83657 0.83434
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.85 13.29 55.43 0.74 -26.12 15
2 C 0.05 1.47 5.46 -17.82 -0.10 1.38 15
3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 15
4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15
5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15
6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15
7 C -0.50 -13.62 8.84 -34.44 -0.30 -13.93 15
8 H 0.06 1.75 7.74 -52.49 -0.41 1.34 15
9 C 0.04 0.91 4.60 -27.88 -0.13 0.78 15
10 C 0.13 2.53 2.64 -68.86 -0.18 2.35 15
11 H 0.09 1.77 7.94 -51.92 -0.41 1.35 15
12 N -0.82 -13.30 8.43 -5.65 -0.05 -13.35 15
13 C -0.13 -2.06 5.08 -104.55 -0.53 -2.59 15
14 C -0.07 -0.89 9.25 -39.60 -0.37 -1.25 15
15 C -0.15 -1.71 10.02 -39.51 -0.40 -2.11 15
16 C 0.12 1.60 7.27 -39.40 -0.29 1.32 15
17 F -0.13 -1.66 16.84 2.25 0.04 -1.62 15
18 C -0.11 -1.72 6.33 -39.38 -0.25 -1.97 15
19 Cl -0.04 -0.55 28.28 -51.86 -1.47 -2.01 15
20 C 0.15 2.45 7.21 -39.40 -0.28 2.16 15
21 F -0.11 -2.02 16.23 2.25 0.04 -1.98 15
22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15
23 H 0.02 0.62 8.14 -51.93 -0.42 0.20 15
24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15
25 H 0.33 4.24 9.06 -39.29 -0.36 3.88 15
26 H 0.34 5.01 7.28 -39.29 -0.29 4.72 15
27 H 0.15 1.51 6.24 -52.49 -0.33 1.18 15
28 H 0.15 1.25 8.06 -52.49 -0.42 0.83 15
LS Contribution 271.56 15.07 4.09 4.09
Total: -1.00 -30.03 271.56 -6.65 -36.68
By element:
Atomic # 1 Polarization: 3.60 SS G_CDS: -2.19 Total: 1.41 kcal
Atomic # 6 Polarization: -11.04 SS G_CDS: -2.83 Total: -13.87 kcal
Atomic # 7 Polarization: -40.15 SS G_CDS: 0.69 Total: -39.46 kcal
Atomic # 9 Polarization: -3.68 SS G_CDS: 0.07 Total: -3.60 kcal
Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal
Atomic # 17 Polarization: -0.55 SS G_CDS: -1.47 Total: -2.01 kcal
Total LS contribution 4.09 Total: 4.09 kcal
Total: -30.03 -6.65 -36.68 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260841182.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.793 kcal
(2) G-P(sol) polarization free energy of solvation -30.031 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.824 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.680 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.473 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.30 seconds