Wall clock time and date at job start Mon Mar 30 2020 07:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 N 1.46904 * 109.47449 * 295.00105 * 10 9 7 13 13 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 14 14 C 1.38237 * 119.98354 * 99.71955 * 13 10 9 15 15 C 1.38198 * 120.07038 * 179.72869 * 14 13 10 16 16 C 1.38474 * 120.03493 * 0.55670 * 15 14 13 17 17 F 1.35103 * 120.01721 * 179.70117 * 16 15 14 18 18 C 1.38493 * 119.96444 * 359.72241 * 16 15 14 19 19 Cl 1.73599 * 120.03626 * 179.97438 * 18 16 15 20 20 C 1.38431 * 119.98220 * 280.00784 * 13 10 9 21 21 F 1.35104 * 120.01662 * 0.02562 * 20 13 10 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.00898 * 111.00551 * 176.04613 * 12 10 9 26 26 H 1.00898 * 110.99372 * 300.00401 * 12 10 9 27 27 H 1.08001 * 119.96418 * 0.02562 * 14 13 10 28 28 H 1.08000 * 119.98283 * 180.25414 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 7 3.0083 -3.6540 -1.2547 13 6 1.4958 -4.9637 0.1244 14 6 1.2489 -5.7285 -1.0004 15 6 0.5668 -6.9252 -0.8881 16 6 0.1194 -7.3544 0.3501 17 9 -0.5526 -8.5214 0.4586 18 6 0.3609 -6.5866 1.4771 19 17 -0.1997 -7.1226 3.0302 20 6 1.0498 -5.3900 1.3636 21 9 1.2857 -4.6392 2.4618 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 3.7159 -4.3732 -1.2524 26 1 2.3959 -3.7518 -2.0507 27 1 1.5937 -5.3928 -1.9673 28 1 0.3784 -7.5235 -1.7672 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260841182.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:15 Heat of formation + Delta-G solvation = -94.449601 kcal Electronic energy + Delta-G solvation = -17116.057664 eV Core-core repulsion = 13827.839318 eV Total energy + Delta-G solvation = -3288.218346 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.18405 -50.12793 -40.46853 -38.01571 -36.79159 -34.54588 -31.86208 -30.91057 -30.22136 -26.39517 -24.25704 -24.02832 -21.60299 -19.48410 -18.68597 -18.49452 -17.34231 -17.28739 -16.86934 -16.69092 -16.45127 -16.25709 -15.70300 -15.59593 -14.75876 -14.30564 -13.92205 -13.84430 -13.64627 -13.20119 -12.97472 -12.75216 -12.67402 -12.39198 -12.25340 -12.15111 -11.52633 -11.23464 -10.51229 -10.01799 -9.73405 -9.52093 -8.12092 -6.18192 -0.36224 -0.25022 0.69733 1.44225 1.44927 1.55917 2.09681 2.47598 2.56077 3.19032 3.22272 3.40183 3.54804 3.78097 3.93518 4.25076 4.46707 4.53903 4.71180 4.78391 4.84064 5.06732 5.44643 5.47208 5.64089 5.85990 6.26744 6.44658 6.83519 6.95608 7.48633 8.99879 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.030626 B = 0.005526 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.039521 B = 5065.752634 C = 5523.082562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.004 4.004 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.044 3.956 10 C 0.151 3.849 11 H 0.072 0.928 12 N -0.823 5.823 13 C -0.144 4.144 14 C -0.057 4.057 15 C -0.125 4.125 16 C 0.121 3.879 17 F -0.121 7.121 18 C -0.124 4.124 19 Cl -0.038 7.038 20 C 0.120 3.880 21 F -0.130 7.130 22 H 0.260 0.740 23 H -0.012 1.012 24 H 0.000 1.000 25 H 0.348 0.652 26 H 0.346 0.654 27 H 0.175 0.825 28 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.196 -16.622 -2.303 16.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.201 4.201 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.007 3.993 10 C 0.039 3.961 11 H 0.090 0.910 12 N -0.355 5.355 13 C -0.148 4.148 14 C -0.075 4.075 15 C -0.144 4.144 16 C 0.101 3.899 17 F -0.100 7.100 18 C -0.153 4.153 19 Cl -0.009 7.009 20 C 0.100 3.900 21 F -0.109 7.109 22 H 0.068 0.932 23 H 0.006 0.994 24 H 0.019 0.981 25 H 0.163 0.837 26 H 0.162 0.838 27 H 0.192 0.808 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.233 -15.825 -1.914 16.096 hybrid contribution -0.563 0.001 0.759 0.945 sum 1.670 -15.824 -1.155 15.954 Atomic orbital electron populations 1.70096 1.07635 1.27340 1.52949 1.25880 0.95630 1.02998 0.95558 0.85512 0.78569 0.79017 0.78289 1.19878 1.21446 1.19105 1.21468 0.93541 0.91226 1.48214 0.91874 1.18943 0.93183 0.92286 0.94915 1.20229 0.93751 0.88409 0.93742 0.90997 1.58579 1.18115 1.55972 1.02794 1.21483 1.01548 1.00001 0.91773 1.21164 0.95441 0.92238 0.98646 1.21521 0.98831 0.97785 0.96257 1.17189 0.96734 0.83225 0.92744 1.91551 1.77387 1.44252 1.96770 1.21106 1.07580 0.97389 0.89224 1.98377 1.87833 1.89369 1.25364 1.17216 0.99750 0.89036 0.84037 1.91534 1.92237 1.75175 1.51919 0.93167 0.99420 0.98139 0.83733 0.83792 0.80792 0.79130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.08 13.29 21.45 0.28 -56.80 15 2 C 0.00 -0.24 5.46 84.66 0.46 0.22 15 3 Si 0.96 44.88 29.54 68.60 2.03 46.90 15 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 15 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 7 C -0.51 -28.18 8.84 25.60 0.23 -27.96 15 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 15 9 C 0.04 2.22 4.60 29.85 0.14 2.36 15 10 C 0.15 5.70 2.64 44.17 0.12 5.82 15 11 H 0.07 2.92 7.94 -2.38 -0.02 2.90 15 12 N -0.82 -25.41 8.43 -171.79 -1.45 -26.86 15 13 C -0.14 -4.51 5.08 -19.82 -0.10 -4.61 15 14 C -0.06 -1.27 9.25 22.26 0.21 -1.06 15 15 C -0.13 -2.40 10.02 22.32 0.22 -2.17 15 16 C 0.12 2.97 7.27 22.39 0.16 3.14 15 17 F -0.12 -2.88 16.84 44.97 0.76 -2.12 15 18 C -0.12 -3.68 6.33 22.40 0.14 -3.54 15 19 Cl -0.04 -1.10 28.28 -2.72 -0.08 -1.18 15 20 C 0.12 4.06 7.21 22.39 0.16 4.22 15 21 F -0.13 -5.06 16.23 44.97 0.73 -4.33 15 22 H 0.26 14.98 8.31 -92.71 -0.77 14.21 15 23 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 15 24 H 0.00 0.02 8.14 -2.39 -0.02 0.00 15 25 H 0.35 8.18 9.06 -89.70 -0.81 7.37 15 26 H 0.35 9.50 7.28 -89.70 -0.65 8.84 15 27 H 0.17 2.86 6.24 -2.91 -0.02 2.84 15 28 H 0.19 2.08 8.06 -2.91 -0.02 2.05 15 Total: -1.00 -66.37 271.56 3.77 -62.59 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -0.24 Total: 5.36 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 1.74 Total: -23.58 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -1.16 Total: -83.66 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 1.49 Total: -6.45 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -66.37 3.77 -62.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260841182.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.855 kcal (2) G-P(sol) polarization free energy of solvation -66.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds