Wall clock time and date at job start Mon Mar 30 2020 07:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 109.47414 * 2 1 4 4 C 1.50703 * 109.47536 * 120.00165 * 2 1 3 5 5 H 1.08003 * 119.99560 * 29.17295 * 4 2 1 6 6 C 1.37876 * 120.00216 * 209.16891 * 4 2 1 7 7 N 1.31515 * 119.99798 * 352.51439 * 6 4 2 8 8 Si 1.86797 * 120.00131 * 172.51555 * 6 4 2 9 9 H 1.48500 * 109.47034 * 270.00107 * 8 6 4 10 10 H 1.48506 * 109.46933 * 30.00171 * 8 6 4 11 11 H 1.48500 * 109.47289 * 149.99971 * 8 6 4 12 12 C 1.50703 * 109.46762 * 240.00077 * 2 1 3 13 13 N 1.29039 * 124.91181 * 299.69120 * 12 2 1 14 14 C 1.31814 * 117.12045 * 179.81587 * 13 12 2 15 15 Br 1.89099 * 122.75973 * 180.23062 * 14 13 12 16 16 C 1.33697 * 114.48019 * 0.47139 * 14 13 12 17 17 S 1.70982 * 124.90956 * 120.00108 * 12 2 1 18 18 H 1.09004 * 109.47341 * 180.37391 * 1 2 3 19 19 H 1.09006 * 109.46820 * 300.36845 * 1 2 3 20 20 H 1.08998 * 109.47431 * 60.37061 * 1 2 3 21 21 H 0.97005 * 120.00330 * 354.50845 * 7 6 4 22 22 H 1.08005 * 126.03518 * 179.78936 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 1.4424 -1.4960 1.6791 6 6 3.2451 -0.3577 1.7833 7 7 4.0305 0.4920 1.1581 8 14 3.7728 -1.0865 3.4203 9 1 3.2971 -0.2165 4.5258 10 1 3.1865 -2.4427 3.5702 11 1 5.2541 -1.1798 3.4661 12 6 2.0322 -0.7104 -1.2305 13 7 1.7841 -1.9420 -1.5252 14 6 2.2997 -2.4074 -2.6455 15 35 2.0327 -4.1845 -3.2341 16 6 3.0312 -1.5211 -3.3289 17 16 3.0193 -0.0033 -2.4343 18 1 -0.3634 -1.0277 0.0067 19 1 -0.3633 0.5196 0.8867 20 1 -0.3634 0.5080 -0.8933 21 1 3.7945 0.8091 0.2722 22 1 3.5393 -1.7033 -4.2644 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049614.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:25 Heat of formation + Delta-G solvation = 11.250831 kcal Electronic energy + Delta-G solvation = -10438.181130 eV Core-core repulsion = 8358.125905 eV Total energy + Delta-G solvation = -2080.055225 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = -0.12 seconds Orbital eigenvalues (eV) -40.67789 -36.66632 -33.45829 -32.21150 -29.94683 -26.79718 -26.33202 -23.15929 -20.63940 -19.31718 -18.53152 -16.50516 -15.83439 -15.78291 -15.63389 -14.84264 -14.30819 -13.88561 -12.90781 -12.75327 -12.68479 -12.51284 -12.04184 -11.96421 -11.78275 -11.44957 -10.96705 -10.68764 -10.42968 -10.36088 -9.62009 -8.66472 -6.39839 -0.28902 -0.06433 0.51632 1.10634 1.53395 1.60353 1.70469 1.78986 2.53930 3.07775 3.58365 4.16598 4.28573 4.43861 4.69534 4.70188 4.99371 5.23472 5.40734 5.91282 6.16469 6.54562 6.73913 7.34160 8.71748 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.027236 B = 0.008075 C = 0.007345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.808431 B = 3466.725014 C = 3811.083499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.080 3.920 3 H 0.042 0.958 4 C -0.579 4.579 5 H 0.048 0.952 6 C -0.022 4.022 7 N -0.925 5.925 8 Si 1.110 2.890 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.286 1.286 12 C 0.097 3.903 13 N -0.497 5.497 14 C 0.048 3.952 15 Br 0.021 6.979 16 C -0.243 4.243 17 S 0.128 5.872 18 H 0.042 0.958 19 H 0.063 0.937 20 H 0.050 0.950 21 H 0.265 0.735 22 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.558 -4.825 -10.082 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.057 3.943 3 H 0.061 0.939 4 C -0.619 4.619 5 H 0.066 0.934 6 C -0.222 4.222 7 N -0.561 5.561 8 Si 0.933 3.067 9 H -0.190 1.190 10 H -0.205 1.205 11 H -0.212 1.212 12 C -0.182 4.182 13 N -0.212 5.212 14 C -0.163 4.163 15 Br 0.103 6.897 16 C -0.386 4.386 17 S 0.385 5.615 18 H 0.062 0.938 19 H 0.082 0.918 20 H 0.069 0.931 21 H 0.076 0.924 22 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.352 -4.725 -8.984 10.241 hybrid contribution -1.090 -0.644 -1.372 1.867 sum -2.442 -5.368 -10.356 11.918 Atomic orbital electron populations 1.21563 0.93736 1.00946 1.00795 1.17908 0.94948 0.94233 0.87171 0.93943 1.22089 1.07030 1.22497 1.10235 0.93396 1.27170 0.93162 0.95027 1.06890 1.70889 1.39076 1.31009 1.15155 0.82995 0.75824 0.75906 0.71996 1.19031 1.20496 1.21177 1.28708 0.97413 0.92726 0.99336 1.65941 1.26381 1.12796 1.16069 1.21944 1.03329 0.96090 0.94930 1.96609 1.96840 1.09907 1.86359 1.27080 1.08320 0.95711 1.07483 1.83874 1.48573 1.14403 1.14615 0.93838 0.91762 0.93140 0.92404 0.77128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.58 9.15 71.98 0.66 -3.92 14 2 C 0.08 3.86 2.38 -12.29 -0.03 3.83 14 3 H 0.04 2.13 6.96 -2.39 -0.02 2.11 14 4 C -0.58 -31.44 8.27 25.60 0.21 -31.23 14 5 H 0.05 2.68 7.83 -2.91 -0.02 2.65 14 6 C -0.02 -1.21 5.44 84.65 0.46 -0.75 14 7 N -0.92 -53.07 13.55 21.45 0.29 -52.78 14 8 Si 1.11 49.33 29.91 68.60 2.05 51.38 14 9 H -0.27 -10.90 7.11 99.48 0.71 -10.19 14 10 H -0.28 -11.98 7.11 99.48 0.71 -11.28 14 11 H -0.29 -12.70 7.11 99.48 0.71 -11.99 14 12 C 0.10 4.45 5.67 88.52 0.50 4.95 14 13 N -0.50 -22.73 10.52 -186.38 -1.96 -24.70 14 14 C 0.05 1.86 7.18 83.66 0.60 2.46 14 15 Br 0.02 0.64 33.99 -20.37 -0.69 -0.05 14 16 C -0.24 -8.16 11.20 66.79 0.75 -7.41 14 17 S 0.13 4.83 22.86 -56.49 -1.29 3.54 14 18 H 0.04 1.84 8.14 -2.39 -0.02 1.82 14 19 H 0.06 2.48 8.14 -2.38 -0.02 2.46 14 20 H 0.05 1.81 8.14 -2.39 -0.02 1.79 14 21 H 0.27 14.83 6.43 -92.70 -0.60 14.23 14 22 H 0.21 5.25 8.06 -2.91 -0.02 5.23 14 Total: -1.00 -60.80 235.15 2.95 -57.84 By element: Atomic # 1 Polarization: -4.57 SS G_CDS: 1.40 Total: -3.17 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 3.15 Total: -32.06 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -1.67 Total: -77.48 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.05 Total: 51.38 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.29 Total: 3.54 kcal Atomic # 35 Polarization: 0.64 SS G_CDS: -0.69 Total: -0.05 kcal Total: -60.80 2.95 -57.84 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049614.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.093 kcal (2) G-P(sol) polarization free energy of solvation -60.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.12 seconds