Wall clock time and date at job start Mon Mar 30 2020 07:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47517 * 2 1 4 4 C 1.50703 * 109.46979 * 240.00442 * 2 1 3 5 5 H 1.08003 * 119.99752 * 275.01936 * 4 2 1 6 6 C 1.37869 * 120.00290 * 95.01056 * 4 2 1 7 7 N 1.31517 * 120.00428 * 184.91543 * 6 4 2 8 8 Si 1.86804 * 120.00015 * 4.92065 * 6 4 2 9 9 H 1.48505 * 109.47203 * 84.83203 * 8 6 4 10 10 H 1.48503 * 109.47134 * 204.83208 * 8 6 4 11 11 H 1.48499 * 109.46929 * 324.83345 * 8 6 4 12 12 C 1.50700 * 109.47349 * 120.00297 * 2 1 3 13 13 N 1.29001 * 124.90171 * 60.04108 * 12 2 1 14 14 C 1.31814 * 117.12905 * 179.97438 * 13 12 2 15 15 C 1.33732 * 114.47114 * 0.02562 * 14 13 12 16 16 Br 1.89099 * 126.04076 * 180.26250 * 15 14 13 17 17 S 1.70969 * 124.90491 * 239.99669 * 12 2 1 18 18 H 1.08999 * 109.47389 * 175.02602 * 1 2 3 19 19 H 1.09004 * 109.46532 * 295.01742 * 1 2 3 20 20 H 1.08998 * 109.47409 * 55.01650 * 1 2 3 21 21 H 0.96999 * 120.00294 * 180.02562 * 7 6 4 22 22 H 1.08000 * 122.76409 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1351 -1.7855 -1.2293 6 6 2.3604 0.0122 -2.3580 7 7 2.7060 -0.6130 -3.4622 8 14 2.3141 1.8792 -2.3172 9 1 3.5998 2.3947 -1.7818 10 1 2.1065 2.3994 -3.6925 11 1 1.1993 2.3277 -1.4447 12 6 2.0324 -0.7105 1.2304 13 7 1.7803 -1.9403 1.5272 14 6 2.3001 -2.4076 2.6448 15 6 3.0312 -1.5210 3.3289 16 35 3.9271 -1.8423 4.9628 17 16 3.0195 -0.0033 2.4339 18 1 -0.3634 -1.0238 -0.0891 19 1 -0.3632 0.4346 0.9313 20 1 -0.3634 0.5892 -0.8420 21 1 2.9372 -0.1046 -4.2553 22 1 2.1480 -3.4228 2.9804 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261134601.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:28 Heat of formation + Delta-G solvation = 35.504490 kcal Electronic energy + Delta-G solvation = -10269.060955 eV Core-core repulsion = 8190.057448 eV Total energy + Delta-G solvation = -2079.003507 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.23673 -34.59005 -32.08153 -31.27478 -28.00149 -25.41718 -24.63012 -21.47597 -18.87388 -17.68603 -16.81967 -15.27615 -14.51917 -14.01616 -13.58717 -13.18578 -12.55739 -12.25887 -11.63871 -11.56586 -11.12196 -10.96385 -10.76924 -10.28208 -10.23172 -9.94596 -9.42325 -9.00989 -8.82801 -8.66691 -8.27522 -6.23138 -4.24122 1.02023 1.22663 1.93355 2.23441 3.16591 3.24626 3.26822 3.29126 4.25850 4.76276 5.12368 5.57301 5.67000 6.10013 6.32235 6.50056 6.59606 6.83217 7.20350 7.45248 8.20928 8.36556 8.87465 9.34589 10.88956 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.049421 B = 0.006177 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.422799 B = 4531.613540 C = 4618.005277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.075 3.925 3 H 0.051 0.949 4 C -0.503 4.503 5 H 0.086 0.914 6 C 0.077 3.923 7 N -0.886 5.886 8 Si 0.866 3.134 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.261 1.261 12 C 0.143 3.857 13 N -0.478 5.478 14 C 0.098 3.902 15 C -0.282 4.282 16 Br 0.001 6.999 17 S 0.114 5.886 18 H 0.060 0.940 19 H 0.025 0.975 20 H 0.055 0.945 21 H 0.268 0.732 22 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 0.687 15.701 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.052 3.948 3 H 0.069 0.931 4 C -0.542 4.542 5 H 0.104 0.896 6 C -0.127 4.127 7 N -0.522 5.522 8 Si 0.692 3.308 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.185 1.185 12 C -0.134 4.134 13 N -0.192 5.192 14 C -0.058 4.058 15 C -0.482 4.482 16 Br 0.083 6.917 17 S 0.371 5.629 18 H 0.079 0.921 19 H 0.044 0.956 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.757 1.292 15.905 16.054 hybrid contribution -0.109 0.057 -0.141 0.187 sum 1.648 1.348 15.764 15.907 Atomic orbital electron populations 1.21941 0.95956 1.01996 0.98913 1.18223 0.93973 0.94479 0.88076 0.93106 1.20797 1.44378 0.95971 0.93092 0.89609 1.25028 0.94161 0.98321 0.95205 1.69869 1.44674 1.36038 1.01669 0.87010 0.79438 0.86301 0.78008 1.19691 1.20827 1.18539 1.28451 0.94243 0.92501 0.98252 1.66462 1.25183 1.12022 1.15496 1.21943 0.93654 1.00480 0.89759 1.27381 1.15904 1.01835 1.03112 1.96571 1.76177 1.95640 1.23326 1.84006 1.50246 1.12813 1.15835 0.92056 0.95617 0.92604 0.92190 0.80953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.15 37.16 0.34 -2.30 14 2 C 0.08 1.71 2.40 -92.92 -0.22 1.49 14 3 H 0.05 1.12 5.27 -51.93 -0.27 0.85 14 4 C -0.50 -13.61 8.83 -34.44 -0.30 -13.92 14 5 H 0.09 2.61 8.06 -52.48 -0.42 2.19 14 6 C 0.08 2.10 5.47 -17.82 -0.10 2.01 14 7 N -0.89 -26.01 13.96 55.43 0.77 -25.24 14 8 Si 0.87 19.99 26.99 -169.99 -4.59 15.40 14 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 14 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 14 11 H -0.26 -5.62 6.82 56.52 0.39 -5.24 14 12 C 0.14 3.01 5.89 -13.47 -0.08 2.93 14 13 N -0.48 -10.02 10.52 -11.84 -0.12 -10.14 14 14 C 0.10 1.72 11.30 -19.14 -0.22 1.50 14 15 C -0.28 -4.66 7.08 29.15 0.21 -4.46 14 16 Br 0.00 0.01 34.09 -68.01 -2.32 -2.31 14 17 S 0.11 2.02 23.17 -107.50 -2.49 -0.47 14 18 H 0.06 1.29 8.14 -51.93 -0.42 0.87 14 19 H 0.02 0.45 8.14 -51.93 -0.42 0.03 14 20 H 0.05 1.12 8.14 -51.93 -0.42 0.70 14 21 H 0.27 7.34 8.31 -40.82 -0.34 7.00 14 22 H 0.17 2.50 8.06 -52.49 -0.42 2.08 14 LS Contribution 234.01 15.07 3.53 3.53 Total: -1.00 -28.22 234.01 -7.13 -35.35 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: -1.54 Total: -3.38 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -0.37 Total: -12.74 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.65 Total: -35.38 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.59 Total: 15.40 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.49 Total: -0.47 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.32 Total: -2.31 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.22 -7.13 -35.35 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134601.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.855 kcal (2) G-P(sol) polarization free energy of solvation -28.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds