Wall clock time and date at job start Mon Mar 30 2020 07:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47517 * 2 1 4 4 C 1.50703 * 109.46979 * 240.00442 * 2 1 3 5 5 H 1.08003 * 119.99752 * 275.01936 * 4 2 1 6 6 C 1.37869 * 120.00290 * 95.01056 * 4 2 1 7 7 N 1.31517 * 120.00428 * 184.91543 * 6 4 2 8 8 Si 1.86804 * 120.00015 * 4.92065 * 6 4 2 9 9 H 1.48505 * 109.47203 * 84.83203 * 8 6 4 10 10 H 1.48503 * 109.47134 * 204.83208 * 8 6 4 11 11 H 1.48499 * 109.46929 * 324.83345 * 8 6 4 12 12 C 1.50700 * 109.47349 * 120.00297 * 2 1 3 13 13 N 1.29001 * 124.90171 * 60.04108 * 12 2 1 14 14 C 1.31814 * 117.12905 * 179.97438 * 13 12 2 15 15 C 1.33732 * 114.47114 * 0.02562 * 14 13 12 16 16 Br 1.89099 * 126.04076 * 180.26250 * 15 14 13 17 17 S 1.70969 * 124.90491 * 239.99669 * 12 2 1 18 18 H 1.08999 * 109.47389 * 175.02602 * 1 2 3 19 19 H 1.09004 * 109.46532 * 295.01742 * 1 2 3 20 20 H 1.08998 * 109.47409 * 55.01650 * 1 2 3 21 21 H 0.96999 * 120.00294 * 180.02562 * 7 6 4 22 22 H 1.08000 * 122.76409 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1351 -1.7855 -1.2293 6 6 2.3604 0.0122 -2.3580 7 7 2.7060 -0.6130 -3.4622 8 14 2.3141 1.8792 -2.3172 9 1 3.5998 2.3947 -1.7818 10 1 2.1065 2.3994 -3.6925 11 1 1.1993 2.3277 -1.4447 12 6 2.0324 -0.7105 1.2304 13 7 1.7803 -1.9403 1.5272 14 6 2.3001 -2.4076 2.6448 15 6 3.0312 -1.5210 3.3289 16 35 3.9271 -1.8423 4.9628 17 16 3.0195 -0.0033 2.4339 18 1 -0.3634 -1.0238 -0.0891 19 1 -0.3632 0.4346 0.9313 20 1 -0.3634 0.5892 -0.8420 21 1 2.9372 -0.1046 -4.2553 22 1 2.1480 -3.4228 2.9804 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261134601.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:28 Heat of formation + Delta-G solvation = 17.575331 kcal Electronic energy + Delta-G solvation = -10269.838422 eV Core-core repulsion = 8190.057448 eV Total energy + Delta-G solvation = -2079.780974 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.71861 -36.36721 -33.86389 -32.77987 -29.42935 -27.30577 -26.21835 -23.09614 -20.49626 -19.22864 -18.72542 -16.86707 -16.16313 -15.56483 -15.22682 -14.75932 -14.42422 -13.89275 -13.21600 -12.96280 -12.84301 -12.62719 -12.28236 -11.95550 -11.78981 -11.44627 -11.33638 -10.81185 -10.42183 -10.22444 -9.69282 -8.31157 -6.38342 -0.43141 -0.13030 0.56980 0.78566 1.37775 1.38478 1.48932 1.81943 2.33309 3.00984 3.40778 4.07727 4.24013 4.45364 4.78245 4.78953 5.05217 5.15485 5.47845 5.58897 6.24613 6.68859 6.80518 7.25089 8.85271 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.049421 B = 0.006177 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.422799 B = 4531.613540 C = 4618.005277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.074 3.926 3 H 0.062 0.938 4 C -0.507 4.507 5 H 0.032 0.968 6 C 0.018 3.982 7 N -0.942 5.942 8 Si 0.931 3.069 9 H -0.260 1.260 10 H -0.283 1.283 11 H -0.231 1.231 12 C 0.102 3.898 13 N -0.505 5.505 14 C 0.082 3.918 15 C -0.275 4.275 16 Br 0.040 6.960 17 S 0.163 5.837 18 H 0.044 0.956 19 H 0.055 0.945 20 H 0.057 0.943 21 H 0.269 0.731 22 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 2.322 18.061 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 H 0.080 0.920 4 C -0.547 4.547 5 H 0.051 0.949 6 C -0.181 4.181 7 N -0.581 5.581 8 Si 0.753 3.247 9 H -0.185 1.185 10 H -0.209 1.209 11 H -0.154 1.154 12 C -0.175 4.175 13 N -0.219 5.219 14 C -0.073 4.073 15 C -0.476 4.476 16 Br 0.122 6.878 17 S 0.419 5.581 18 H 0.063 0.937 19 H 0.074 0.926 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.904 2.922 18.289 18.619 hybrid contribution -0.089 -0.596 -0.682 0.910 sum 1.815 2.326 17.607 17.852 Atomic orbital electron populations 1.21824 0.94515 1.01370 1.00579 1.18095 0.95146 0.94544 0.87115 0.91966 1.20872 1.44208 0.93910 0.95679 0.94923 1.25943 0.93719 1.04000 0.94428 1.70036 1.47001 1.38341 1.02692 0.85974 0.80854 0.79350 0.78567 1.18518 1.20859 1.15412 1.27966 0.96701 0.93149 0.99712 1.66414 1.26004 1.12507 1.16988 1.22275 0.94081 1.01825 0.89109 1.27703 1.14695 1.01035 1.04128 1.96627 1.75207 1.95452 1.20534 1.83682 1.48033 1.12398 1.14024 0.93680 0.92568 0.92415 0.92164 0.78484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 9.15 71.98 0.66 -4.28 14 2 C 0.07 3.30 2.40 -12.29 -0.03 3.27 14 3 H 0.06 2.60 5.27 -2.39 -0.01 2.59 14 4 C -0.51 -28.29 8.83 25.60 0.23 -28.07 14 5 H 0.03 2.10 8.06 -2.91 -0.02 2.08 14 6 C 0.02 0.98 5.47 84.65 0.46 1.44 14 7 N -0.94 -57.40 13.96 21.44 0.30 -57.10 14 8 Si 0.93 40.61 26.99 68.60 1.85 42.46 14 9 H -0.26 -10.85 7.11 99.48 0.71 -10.15 14 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 14 11 H -0.23 -8.92 6.82 99.48 0.68 -8.24 14 12 C 0.10 4.21 5.89 88.52 0.52 4.73 14 13 N -0.50 -21.01 10.52 -191.38 -2.01 -23.03 14 14 C 0.08 2.76 11.30 83.67 0.95 3.71 14 15 C -0.28 -8.42 7.08 66.80 0.47 -7.94 14 16 Br 0.04 0.93 34.09 -20.37 -0.69 0.23 14 17 S 0.16 5.36 23.17 -56.49 -1.31 4.05 14 18 H 0.04 1.90 8.14 -2.39 -0.02 1.88 14 19 H 0.06 1.88 8.14 -2.38 -0.02 1.86 14 20 H 0.06 2.23 8.14 -2.39 -0.02 2.21 14 21 H 0.27 15.27 8.31 -92.71 -0.77 14.50 14 22 H 0.20 5.36 8.06 -2.91 -0.02 5.33 14 Total: -1.00 -62.63 234.01 2.60 -60.03 By element: Atomic # 1 Polarization: -0.71 SS G_CDS: 1.20 Total: 0.50 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 3.26 Total: -27.14 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -1.71 Total: -80.13 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 1.85 Total: 42.46 kcal Atomic # 16 Polarization: 5.36 SS G_CDS: -1.31 Total: 4.05 kcal Atomic # 35 Polarization: 0.93 SS G_CDS: -0.69 Total: 0.23 kcal Total: -62.63 2.60 -60.03 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134601.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.607 kcal (2) G-P(sol) polarization free energy of solvation -62.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds