Wall clock time and date at job start Mon Mar 30 2020 07:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 109.47280 * 2 1 4 4 C 1.50701 * 109.47575 * 120.00300 * 2 1 3 5 5 H 1.08000 * 119.99650 * 28.25261 * 4 2 1 6 6 C 1.37877 * 120.00220 * 208.25447 * 4 2 1 7 7 N 1.31509 * 119.99805 * 353.71176 * 6 4 2 8 8 Si 1.86798 * 119.99806 * 173.71802 * 6 4 2 9 9 H 1.48503 * 109.46844 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.47225 * 299.99666 * 8 6 4 11 11 H 1.48502 * 109.47270 * 60.00143 * 8 6 4 12 12 C 1.50707 * 109.46841 * 240.00438 * 2 1 3 13 13 N 1.28999 * 124.91000 * 120.00178 * 12 2 1 14 14 C 1.31804 * 117.13553 * 180.02562 * 13 12 2 15 15 C 1.33729 * 114.47037 * 359.97438 * 14 13 12 16 16 Br 1.89103 * 126.04032 * 180.02562 * 15 14 13 17 17 S 1.70977 * 124.90320 * 299.69393 * 12 2 1 18 18 H 1.09004 * 109.47341 * 184.51400 * 1 2 3 19 19 H 1.09006 * 109.46820 * 304.50854 * 1 2 3 20 20 H 1.08998 * 109.47431 * 64.51069 * 1 2 3 21 21 H 0.97003 * 120.00647 * 354.61377 * 7 6 4 22 22 H 1.07999 * 122.76449 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 1.4356 -1.4858 1.6877 6 6 3.2538 -0.3706 1.7723 7 7 4.0352 0.4835 1.1483 8 14 3.7987 -1.1236 3.3926 9 1 5.1398 -0.5993 3.7558 10 1 2.8239 -0.7699 4.4555 11 1 3.8661 -2.6006 3.2543 12 6 2.0322 -0.7104 -1.2306 13 7 2.7770 -0.1768 -2.1387 14 6 3.1277 -0.9408 -3.1539 15 6 2.6520 -2.1893 -3.0979 16 35 2.9514 -3.5523 -4.3740 17 16 1.7034 -2.3422 -1.6210 18 1 -0.3634 -1.0245 0.0809 19 1 -0.3633 0.5822 0.8469 20 1 -0.3634 0.4422 -0.9276 21 1 3.7887 0.8146 0.2704 22 1 3.7482 -0.5875 -3.9642 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261134603.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:30 Heat of formation + Delta-G solvation = 10.077860 kcal Electronic energy + Delta-G solvation = -10392.864729 eV Core-core repulsion = 8312.758640 eV Total energy + Delta-G solvation = -2080.106089 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.64981 -36.67743 -33.51884 -32.65035 -29.51133 -26.77771 -25.97009 -23.18558 -20.78220 -19.54983 -18.34111 -16.54052 -15.79772 -15.70108 -15.55914 -14.91717 -14.09984 -13.85188 -12.98463 -12.83868 -12.78086 -12.53358 -12.28845 -11.99282 -11.77434 -11.41882 -10.83588 -10.74252 -10.45512 -10.15340 -9.62340 -8.65078 -6.45349 -0.36655 -0.06530 0.65586 0.90499 1.55351 1.61304 1.80439 1.84428 2.55913 3.06687 3.48429 4.23552 4.28569 4.49750 4.64641 4.79564 5.07484 5.29049 5.33259 5.89043 6.15150 6.52516 6.80934 7.39149 8.72838 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.035584 B = 0.007137 C = 0.006706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.687035 B = 3922.500778 C = 4174.380011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.075 3.925 3 H 0.032 0.968 4 C -0.603 4.603 5 H 0.065 0.935 6 C -0.022 4.022 7 N -0.927 5.927 8 Si 1.108 2.892 9 H -0.290 1.290 10 H -0.262 1.262 11 H -0.269 1.269 12 C 0.102 3.898 13 N -0.530 5.530 14 C 0.079 3.921 15 C -0.290 4.290 16 Br 0.037 6.963 17 S 0.180 5.820 18 H 0.057 0.943 19 H 0.066 0.934 20 H 0.048 0.952 21 H 0.268 0.732 22 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 -8.738 -9.455 13.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.053 3.947 3 H 0.050 0.950 4 C -0.641 4.641 5 H 0.084 0.916 6 C -0.223 4.223 7 N -0.561 5.561 8 Si 0.929 3.071 9 H -0.216 1.216 10 H -0.187 1.187 11 H -0.195 1.195 12 C -0.174 4.174 13 N -0.245 5.245 14 C -0.077 4.077 15 C -0.490 4.490 16 Br 0.119 6.881 17 S 0.435 5.565 18 H 0.076 0.924 19 H 0.085 0.915 20 H 0.067 0.933 21 H 0.079 0.921 22 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.387 -9.447 -8.259 12.997 hybrid contribution -0.337 0.903 -1.756 2.003 sum -3.724 -8.545 -10.014 13.681 Atomic orbital electron populations 1.21706 0.93257 1.01791 1.01072 1.17924 0.94693 0.95147 0.86938 0.94966 1.22177 1.06522 1.24333 1.11104 0.91645 1.27295 0.93556 0.94872 1.06598 1.70815 1.39667 1.29841 1.15822 0.83071 0.76176 0.75953 0.71904 1.21586 1.18694 1.19463 1.28848 0.95099 0.95751 0.97732 1.66593 1.16030 1.38133 1.03759 1.22171 0.99470 0.88496 0.97524 1.27726 1.16630 1.00170 1.04452 1.96575 1.95674 1.45400 1.50440 1.83532 1.47151 1.13283 1.12497 0.92408 0.91481 0.93321 0.92109 0.78961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.64 9.04 71.98 0.65 -3.99 14 2 C 0.08 3.64 2.37 -12.29 -0.03 3.61 14 3 H 0.03 1.76 6.97 -2.39 -0.02 1.75 14 4 C -0.60 -31.33 8.15 25.60 0.21 -31.13 14 5 H 0.07 3.27 7.82 -2.91 -0.02 3.24 14 6 C -0.02 -1.18 5.45 84.66 0.46 -0.72 14 7 N -0.93 -55.72 13.56 21.45 0.29 -55.43 14 8 Si 1.11 47.95 29.91 68.60 2.05 50.00 14 9 H -0.29 -12.91 7.11 99.48 0.71 -12.21 14 10 H -0.26 -10.35 7.11 99.48 0.71 -9.65 14 11 H -0.27 -10.87 7.11 99.48 0.71 -10.17 14 12 C 0.10 4.67 5.80 88.53 0.51 5.19 14 13 N -0.53 -24.28 10.54 -191.38 -2.02 -26.30 14 14 C 0.08 3.00 11.30 83.67 0.95 3.94 14 15 C -0.29 -10.16 7.08 66.80 0.47 -9.69 14 16 Br 0.04 1.00 34.09 -20.37 -0.69 0.30 14 17 S 0.18 6.89 22.83 -56.49 -1.29 5.60 14 18 H 0.06 2.07 8.09 -2.39 -0.02 2.05 14 19 H 0.07 2.46 8.14 -2.38 -0.02 2.44 14 20 H 0.05 1.70 8.14 -2.39 -0.02 1.68 14 21 H 0.27 16.52 6.72 -92.71 -0.62 15.90 14 22 H 0.19 6.06 8.06 -2.91 -0.02 6.04 14 Total: -1.00 -60.46 235.38 2.94 -57.52 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: 1.38 Total: 1.09 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: 3.22 Total: -32.78 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -1.73 Total: -81.73 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.05 Total: 50.00 kcal Atomic # 16 Polarization: 6.89 SS G_CDS: -1.29 Total: 5.60 kcal Atomic # 35 Polarization: 1.00 SS G_CDS: -0.69 Total: 0.30 kcal Total: -60.46 2.94 -57.52 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134603.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.595 kcal (2) G-P(sol) polarization free energy of solvation -60.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds