Wall clock time and date at job start Mon Mar 30 2020 07:19:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52990 * 1
3 3 H 1.08999 * 109.47280 * 2 1
4 4 C 1.50701 * 109.47575 * 120.00300 * 2 1 3
5 5 H 1.08000 * 119.99650 * 28.25261 * 4 2 1
6 6 C 1.37877 * 120.00220 * 208.25447 * 4 2 1
7 7 N 1.31509 * 119.99805 * 353.71176 * 6 4 2
8 8 Si 1.86798 * 119.99806 * 173.71802 * 6 4 2
9 9 H 1.48503 * 109.46844 * 179.97438 * 8 6 4
10 10 H 1.48498 * 109.47225 * 299.99666 * 8 6 4
11 11 H 1.48502 * 109.47270 * 60.00143 * 8 6 4
12 12 C 1.50707 * 109.46841 * 240.00438 * 2 1 3
13 13 N 1.28999 * 124.91000 * 120.00178 * 12 2 1
14 14 C 1.31804 * 117.13553 * 180.02562 * 13 12 2
15 15 C 1.33729 * 114.47037 * 359.97438 * 14 13 12
16 16 Br 1.89103 * 126.04032 * 180.02562 * 15 14 13
17 17 S 1.70977 * 124.90320 * 299.69393 * 12 2 1
18 18 H 1.09004 * 109.47341 * 184.51400 * 1 2 3
19 19 H 1.09006 * 109.46820 * 304.50854 * 1 2 3
20 20 H 1.08998 * 109.47431 * 64.51069 * 1 2 3
21 21 H 0.97003 * 120.00647 * 354.61377 * 7 6 4
22 22 H 1.07999 * 122.76449 * 179.97438 * 14 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7105 1.2304
5 1 1.4356 -1.4858 1.6877
6 6 3.2538 -0.3706 1.7723
7 7 4.0352 0.4835 1.1483
8 14 3.7987 -1.1236 3.3926
9 1 5.1398 -0.5993 3.7558
10 1 2.8239 -0.7699 4.4555
11 1 3.8661 -2.6006 3.2543
12 6 2.0322 -0.7104 -1.2306
13 7 2.7770 -0.1768 -2.1387
14 6 3.1277 -0.9408 -3.1539
15 6 2.6520 -2.1893 -3.0979
16 35 2.9514 -3.5523 -4.3740
17 16 1.7034 -2.3422 -1.6210
18 1 -0.3634 -1.0245 0.0809
19 1 -0.3633 0.5822 0.8469
20 1 -0.3634 0.4422 -0.9276
21 1 3.7887 0.8146 0.2704
22 1 3.7482 -0.5875 -3.9642
RHF calculation, no. of doubly occupied orbitals= 33
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261134603.mol2 22
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:19:30
Heat of formation + Delta-G solvation = 10.077860 kcal
Electronic energy + Delta-G solvation = -10392.864729 eV
Core-core repulsion = 8312.758640 eV
Total energy + Delta-G solvation = -2080.106089 eV
No. of doubly occupied orbitals = 33
Molecular weight
(most abundant/longest-lived isotopes) = 260.952 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-40.64981 -36.67743 -33.51884 -32.65035 -29.51133 -26.77771 -25.97009 -23.18558
-20.78220 -19.54983 -18.34111 -16.54052 -15.79772 -15.70108 -15.55914 -14.91717
-14.09984 -13.85188 -12.98463 -12.83868 -12.78086 -12.53358 -12.28845 -11.99282
-11.77434 -11.41882 -10.83588 -10.74252 -10.45512 -10.15340 -9.62340 -8.65078
-6.45349 -0.36655 -0.06530 0.65586 0.90499 1.55351 1.61304 1.80439
1.84428 2.55913 3.06687 3.48429 4.23552 4.28569 4.49750 4.64641
4.79564 5.07484 5.29049 5.33259 5.89043 6.15150 6.52516 6.80934
7.39149 8.72838
Molecular weight = 260.95amu
Principal moments of inertia in cm(-1)
A = 0.035584 B = 0.007137 C = 0.006706
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 786.687035 B = 3922.500778 C = 4174.380011
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C 0.075 3.925
3 H 0.032 0.968
4 C -0.603 4.603
5 H 0.065 0.935
6 C -0.022 4.022
7 N -0.927 5.927
8 Si 1.108 2.892
9 H -0.290 1.290
10 H -0.262 1.262
11 H -0.269 1.269
12 C 0.102 3.898
13 N -0.530 5.530
14 C 0.079 3.921
15 C -0.290 4.290
16 Br 0.037 6.963
17 S 0.180 5.820
18 H 0.057 0.943
19 H 0.066 0.934
20 H 0.048 0.952
21 H 0.268 0.732
22 H 0.194 0.806
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.261 -8.738 -9.455 13.561
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.053 3.947
3 H 0.050 0.950
4 C -0.641 4.641
5 H 0.084 0.916
6 C -0.223 4.223
7 N -0.561 5.561
8 Si 0.929 3.071
9 H -0.216 1.216
10 H -0.187 1.187
11 H -0.195 1.195
12 C -0.174 4.174
13 N -0.245 5.245
14 C -0.077 4.077
15 C -0.490 4.490
16 Br 0.119 6.881
17 S 0.435 5.565
18 H 0.076 0.924
19 H 0.085 0.915
20 H 0.067 0.933
21 H 0.079 0.921
22 H 0.210 0.790
Dipole moment (debyes) X Y Z Total
from point charges -3.387 -9.447 -8.259 12.997
hybrid contribution -0.337 0.903 -1.756 2.003
sum -3.724 -8.545 -10.014 13.681
Atomic orbital electron populations
1.21706 0.93257 1.01791 1.01072 1.17924 0.94693 0.95147 0.86938
0.94966 1.22177 1.06522 1.24333 1.11104 0.91645 1.27295 0.93556
0.94872 1.06598 1.70815 1.39667 1.29841 1.15822 0.83071 0.76176
0.75953 0.71904 1.21586 1.18694 1.19463 1.28848 0.95099 0.95751
0.97732 1.66593 1.16030 1.38133 1.03759 1.22171 0.99470 0.88496
0.97524 1.27726 1.16630 1.00170 1.04452 1.96575 1.95674 1.45400
1.50440 1.83532 1.47151 1.13283 1.12497 0.92408 0.91481 0.93321
0.92109 0.78961
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.64 9.04 71.98 0.65 -3.99 14
2 C 0.08 3.64 2.37 -12.29 -0.03 3.61 14
3 H 0.03 1.76 6.97 -2.39 -0.02 1.75 14
4 C -0.60 -31.33 8.15 25.60 0.21 -31.13 14
5 H 0.07 3.27 7.82 -2.91 -0.02 3.24 14
6 C -0.02 -1.18 5.45 84.66 0.46 -0.72 14
7 N -0.93 -55.72 13.56 21.45 0.29 -55.43 14
8 Si 1.11 47.95 29.91 68.60 2.05 50.00 14
9 H -0.29 -12.91 7.11 99.48 0.71 -12.21 14
10 H -0.26 -10.35 7.11 99.48 0.71 -9.65 14
11 H -0.27 -10.87 7.11 99.48 0.71 -10.17 14
12 C 0.10 4.67 5.80 88.53 0.51 5.19 14
13 N -0.53 -24.28 10.54 -191.38 -2.02 -26.30 14
14 C 0.08 3.00 11.30 83.67 0.95 3.94 14
15 C -0.29 -10.16 7.08 66.80 0.47 -9.69 14
16 Br 0.04 1.00 34.09 -20.37 -0.69 0.30 14
17 S 0.18 6.89 22.83 -56.49 -1.29 5.60 14
18 H 0.06 2.07 8.09 -2.39 -0.02 2.05 14
19 H 0.07 2.46 8.14 -2.38 -0.02 2.44 14
20 H 0.05 1.70 8.14 -2.39 -0.02 1.68 14
21 H 0.27 16.52 6.72 -92.71 -0.62 15.90 14
22 H 0.19 6.06 8.06 -2.91 -0.02 6.04 14
Total: -1.00 -60.46 235.38 2.94 -57.52
By element:
Atomic # 1 Polarization: -0.29 SS G_CDS: 1.38 Total: 1.09 kcal
Atomic # 6 Polarization: -36.01 SS G_CDS: 3.22 Total: -32.78 kcal
Atomic # 7 Polarization: -80.00 SS G_CDS: -1.73 Total: -81.73 kcal
Atomic # 14 Polarization: 47.95 SS G_CDS: 2.05 Total: 50.00 kcal
Atomic # 16 Polarization: 6.89 SS G_CDS: -1.29 Total: 5.60 kcal
Atomic # 35 Polarization: 1.00 SS G_CDS: -0.69 Total: 0.30 kcal
Total: -60.46 2.94 -57.52 kcal
The number of atoms in the molecule is 22
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261134603.mol2 22
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.595 kcal
(2) G-P(sol) polarization free energy of solvation -60.459 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.136 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.517 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.078 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds