Wall clock time and date at job start Mon Mar 30 2020 07:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.50696 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.29048 * 124.90325 * 90.00278 * 11 10 9 13 13 C 1.31816 * 117.11509 * 179.97438 * 12 11 10 14 14 Br 1.89105 * 122.75662 * 179.97438 * 13 12 11 15 15 C 1.33705 * 114.48514 * 0.02562 * 13 12 11 16 16 S 1.70973 * 124.91401 * 269.69708 * 11 10 9 17 17 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 19 19 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 20 20 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 21 21 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 22 22 H 1.07996 * 126.03786 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0086 11 6 5.5287 -2.6363 0.0085 12 7 6.2671 -2.6308 1.0668 13 6 7.5731 -2.6321 0.8881 14 35 8.8024 -2.6241 2.3251 15 6 7.9572 -2.6386 -0.3925 16 16 6.5072 -2.6509 -1.3934 17 1 -0.4850 0.8400 -0.0004 18 1 3.8752 -0.6845 -0.8913 19 1 3.8746 -0.6756 0.8886 20 1 3.6580 -3.1457 0.9010 21 1 3.6588 -3.1546 -0.8790 22 1 8.9762 -2.6403 -0.7502 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261143151.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:16 Heat of formation + Delta-G solvation = 33.687324 kcal Electronic energy + Delta-G solvation = -9987.648030 eV Core-core repulsion = 7908.565725 eV Total energy + Delta-G solvation = -2079.082306 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.61963 -34.35912 -32.31634 -31.10859 -29.09561 -26.58802 -23.49883 -20.89484 -19.65839 -17.93561 -16.79768 -15.44706 -14.83148 -14.16314 -14.07834 -13.25156 -12.80175 -12.61125 -11.74572 -11.65122 -11.06843 -10.99552 -10.45245 -10.30400 -10.19036 -9.86670 -9.50758 -9.36204 -9.30041 -8.60648 -8.59352 -6.10821 -4.10571 0.68253 0.94145 1.51910 2.10669 2.68820 3.27516 3.35902 3.40689 4.40315 4.48834 5.12927 5.21367 5.23183 5.75414 6.04765 6.16654 6.55845 7.08509 7.22161 7.66192 7.68686 8.42868 8.91967 9.50452 11.02012 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.034979 B = 0.005702 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.284928 B = 4909.674624 C = 5247.138427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.037 4.037 11 C 0.093 3.907 12 N -0.469 5.469 13 C 0.073 3.927 14 Br 0.006 6.994 15 C -0.249 4.249 16 S 0.148 5.852 17 H 0.265 0.735 18 H 0.014 0.986 19 H 0.025 0.975 20 H 0.094 0.906 21 H 0.084 0.916 22 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.335 -5.888 -0.174 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.043 4.043 10 C -0.078 4.078 11 C -0.186 4.186 12 N -0.183 5.183 13 C -0.139 4.139 14 Br 0.088 6.912 15 C -0.392 4.392 16 S 0.403 5.597 17 H 0.074 0.926 18 H 0.033 0.967 19 H 0.043 0.957 20 H 0.112 0.888 21 H 0.103 0.897 22 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 19.174 -5.790 -0.203 20.030 hybrid contribution 0.791 0.992 0.449 1.346 sum 19.965 -4.798 0.246 20.535 Atomic orbital electron populations 1.69894 1.06236 1.27063 1.50507 1.24964 0.94723 0.99101 0.94319 0.86835 0.80544 0.83724 0.78626 1.20135 1.21146 1.18944 1.20994 0.88673 0.94803 1.51677 0.90574 1.19599 0.97595 0.90010 0.97102 1.20540 0.81051 1.02187 1.03988 1.27843 1.02934 0.98271 0.89594 1.66142 1.02553 1.17557 1.32047 1.21616 0.91693 1.08637 0.91947 1.96705 1.52265 1.97830 1.44391 1.26863 1.04318 1.13013 0.94968 1.84106 0.95776 1.66872 1.12896 0.92560 0.96742 0.95706 0.88796 0.89722 0.80081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.44 14 2 C 0.07 2.03 5.47 -17.82 -0.10 1.94 14 3 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 14 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 14 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 14 6 H -0.26 -6.40 6.53 56.52 0.37 -6.03 14 7 C -0.52 -14.46 9.66 -34.44 -0.33 -14.80 14 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 14 9 C 0.00 -0.09 4.02 -27.88 -0.11 -0.21 14 10 C -0.04 -0.70 5.73 -27.89 -0.16 -0.86 14 11 C 0.09 1.63 6.64 -13.45 -0.09 1.54 14 12 N -0.47 -8.57 10.55 -10.26 -0.11 -8.68 14 13 C 0.07 1.14 7.18 -19.15 -0.14 1.00 14 14 Br 0.01 0.08 33.99 -68.01 -2.31 -2.24 14 15 C -0.25 -3.25 11.20 29.14 0.33 -2.92 14 16 S 0.15 2.05 23.18 -107.50 -2.49 -0.44 14 17 H 0.26 7.50 8.31 -40.82 -0.34 7.17 14 18 H 0.01 0.33 7.58 -51.93 -0.39 -0.07 14 19 H 0.02 0.61 7.18 -51.93 -0.37 0.23 14 20 H 0.09 1.82 8.14 -51.93 -0.42 1.40 14 21 H 0.08 1.47 8.14 -51.93 -0.42 1.05 14 22 H 0.18 1.76 8.06 -52.49 -0.42 1.34 14 LS Contribution 235.21 15.07 3.54 3.54 Total: -1.00 -30.09 235.21 -7.49 -37.58 By element: Atomic # 1 Polarization: -4.26 SS G_CDS: -1.62 Total: -5.88 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -0.60 Total: -14.32 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.67 Total: -35.12 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.49 Total: -0.44 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -2.31 Total: -2.24 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.09 -7.49 -37.58 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143151.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.264 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds