Wall clock time and date at job start Mon Mar 30 2020 07:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.50696 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.29048 * 124.90325 * 90.00278 * 11 10 9 13 13 C 1.31816 * 117.11509 * 179.97438 * 12 11 10 14 14 Br 1.89105 * 122.75662 * 179.97438 * 13 12 11 15 15 C 1.33705 * 114.48514 * 0.02562 * 13 12 11 16 16 S 1.70973 * 124.91401 * 269.69708 * 11 10 9 17 17 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 19 19 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 20 20 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 21 21 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 22 22 H 1.07996 * 126.03786 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0086 11 6 5.5287 -2.6363 0.0085 12 7 6.2671 -2.6308 1.0668 13 6 7.5731 -2.6321 0.8881 14 35 8.8024 -2.6241 2.3251 15 6 7.9572 -2.6386 -0.3925 16 16 6.5072 -2.6509 -1.3934 17 1 -0.4850 0.8400 -0.0004 18 1 3.8752 -0.6845 -0.8913 19 1 3.8746 -0.6756 0.8886 20 1 3.6580 -3.1457 0.9010 21 1 3.6588 -3.1546 -0.8790 22 1 8.9762 -2.6403 -0.7502 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143151.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:15 Heat of formation + Delta-G solvation = 14.286393 kcal Electronic energy + Delta-G solvation = -9988.489318 eV Core-core repulsion = 7908.565725 eV Total energy + Delta-G solvation = -2079.923593 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.82509 -36.11372 -34.11708 -32.46214 -30.38388 -28.23583 -25.01238 -22.64862 -20.88067 -19.34304 -18.68327 -16.64170 -16.46990 -15.79839 -15.46984 -14.88423 -14.56998 -14.12921 -13.48571 -12.91561 -12.73261 -12.46450 -11.98453 -11.80458 -11.73569 -11.47606 -11.43650 -10.78911 -10.72958 -10.51905 -9.74707 -8.30533 -6.34973 -0.46781 -0.11956 0.34078 1.00537 1.33708 1.37204 1.47295 1.48296 2.34404 3.04673 3.24378 4.00996 4.17959 4.38585 4.51158 4.63908 4.91566 5.28401 5.38559 5.59358 6.23694 6.49306 6.72026 7.29597 8.85561 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.034979 B = 0.005702 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.284928 B = 4909.674624 C = 5247.138427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.942 3.058 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.530 4.530 8 H 0.044 0.956 9 C 0.002 3.998 10 C -0.028 4.028 11 C 0.051 3.949 12 N -0.496 5.496 13 C 0.039 3.961 14 Br 0.021 6.979 15 C -0.224 4.224 16 S 0.213 5.787 17 H 0.267 0.733 18 H 0.026 0.974 19 H 0.011 0.989 20 H 0.079 0.921 21 H 0.097 0.903 22 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.972 -5.366 -1.211 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.765 3.235 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.568 4.568 8 H 0.062 0.938 9 C -0.037 4.037 10 C -0.068 4.068 11 C -0.228 4.228 12 N -0.211 5.211 13 C -0.172 4.172 14 Br 0.103 6.897 15 C -0.367 4.367 16 S 0.468 5.532 17 H 0.076 0.924 18 H 0.044 0.956 19 H 0.030 0.970 20 H 0.097 0.903 21 H 0.116 0.884 22 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 21.816 -5.282 -1.244 22.480 hybrid contribution 0.034 0.732 0.748 1.047 sum 21.849 -4.550 -0.496 22.323 Atomic orbital electron populations 1.70036 1.08043 1.28188 1.52267 1.25881 0.95543 1.03123 0.94141 0.85784 0.79247 0.78959 0.79481 1.18402 1.20876 1.18151 1.21338 0.91177 0.93622 1.50650 0.93778 1.19445 0.94533 0.92986 0.96738 1.20197 0.83153 0.99408 1.04081 1.27337 1.02293 1.01388 0.91749 1.66077 1.04087 1.17517 1.33464 1.21891 0.91139 1.10599 0.93586 1.96702 1.51039 1.97892 1.44096 1.27404 1.05937 1.09284 0.94033 1.83832 0.94485 1.64942 1.09978 0.92367 0.95590 0.97018 0.90251 0.88446 0.76351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.47 13.96 21.45 0.30 -58.17 14 2 C 0.01 0.62 5.47 84.65 0.46 1.08 14 3 Si 0.94 44.19 27.47 68.60 1.88 46.07 14 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 14 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 14 6 H -0.26 -11.68 6.53 99.48 0.65 -11.03 14 7 C -0.53 -29.87 9.66 25.60 0.25 -29.62 14 8 H 0.04 2.69 7.99 -2.91 -0.02 2.66 14 9 C 0.00 0.09 4.02 29.85 0.12 0.21 14 10 C -0.03 -1.06 5.73 29.85 0.17 -0.89 14 11 C 0.05 1.71 6.64 88.52 0.59 2.29 14 12 N -0.50 -17.53 10.55 -186.38 -1.97 -19.49 14 13 C 0.04 1.12 7.18 83.67 0.60 1.72 14 14 Br 0.02 0.50 33.99 -20.37 -0.69 -0.19 14 15 C -0.22 -5.00 11.20 66.79 0.75 -4.25 14 16 S 0.21 5.18 23.18 -56.49 -1.31 3.87 14 17 H 0.27 15.44 8.31 -92.71 -0.77 14.67 14 18 H 0.03 1.14 7.58 -2.39 -0.02 1.12 14 19 H 0.01 0.56 7.18 -2.39 -0.02 0.54 14 20 H 0.08 3.17 8.14 -2.39 -0.02 3.15 14 21 H 0.10 3.36 8.14 -2.39 -0.02 3.34 14 22 H 0.22 3.08 8.06 -2.91 -0.02 3.06 14 Total: -1.00 -65.27 235.21 2.33 -62.94 By element: Atomic # 1 Polarization: -6.75 SS G_CDS: 1.17 Total: -5.57 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: 2.94 Total: -29.45 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -1.67 Total: -77.67 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Atomic # 16 Polarization: 5.18 SS G_CDS: -1.31 Total: 3.87 kcal Atomic # 35 Polarization: 0.50 SS G_CDS: -0.69 Total: -0.19 kcal Total: -65.27 2.33 -62.94 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143151.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.231 kcal (2) G-P(sol) polarization free energy of solvation -65.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds