Wall clock time and date at job start Mon Mar 30 2020 07:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86800 * 120.00113 * 2 1 4 4 H 1.48499 * 109.47107 * 274.98885 * 3 2 1 5 5 H 1.48497 * 109.46818 * 34.98654 * 3 2 1 6 6 H 1.48497 * 109.46873 * 154.98651 * 3 2 1 7 7 C 1.40079 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99661 * 173.73485 * 7 2 1 9 9 C 1.41555 * 120.00021 * 354.01443 * 7 2 1 10 10 N 1.33686 * 119.67035 * 5.98349 * 9 7 2 11 11 N 1.28697 * 121.38755 * 179.97438 * 10 9 7 12 12 C 1.32383 * 120.62610 * 359.97438 * 11 10 9 13 13 C 1.40282 * 119.29719 * 359.97438 * 12 11 10 14 14 C 1.48270 * 120.64133 * 180.02562 * 13 12 11 15 15 C 1.39410 * 120.13416 * 312.25940 * 14 13 12 16 16 C 1.37972 * 119.88308 * 179.74415 * 15 14 13 17 17 C 1.38376 * 120.15941 * 0.55466 * 16 15 14 18 18 C 1.38266 * 120.26699 * 359.69396 * 17 16 15 19 19 C 1.38170 * 120.11508 * 0.02585 * 18 17 16 20 20 Cl 1.73603 * 120.08032 * 180.02562 * 19 18 17 21 21 N 1.32876 * 118.71214 * 359.74809 * 13 12 11 22 22 H 0.96996 * 120.00070 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.34822 * 180.02562 * 12 11 10 24 24 H 1.07999 * 120.05913 * 0.02562 * 15 14 13 25 25 H 1.08001 * 119.92038 * 180.26940 * 16 15 14 26 26 H 1.07998 * 119.86805 * 179.72023 * 17 16 15 27 27 H 1.08007 * 119.94464 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.3829 2.1073 -1.3948 5 1 1.4950 2.6199 0.8028 6 1 3.5871 1.4119 0.5920 7 6 2.0072 -1.2131 -0.0005 8 1 3.0823 -1.2159 -0.1026 9 6 1.3051 -2.4357 0.1267 10 7 -0.0317 -2.4343 0.1263 11 7 -0.7032 -3.5264 0.2395 12 6 -0.0832 -4.6899 0.3599 13 6 1.3192 -4.7234 0.3626 14 6 2.0441 -6.0100 0.4951 15 6 1.6795 -6.9199 1.4864 16 6 2.3541 -8.1179 1.6016 17 6 3.3986 -8.4129 0.7433 18 6 3.7690 -7.5130 -0.2388 19 6 3.0973 -6.3124 -0.3680 20 17 3.5627 -5.1834 -1.6019 21 7 1.9853 -3.5803 0.2384 22 1 -0.4850 0.8400 0.0004 23 1 -0.6512 -5.6037 0.4542 24 1 0.8674 -6.6894 2.1600 25 1 2.0693 -8.8251 2.3666 26 1 3.9264 -9.3501 0.8407 27 1 4.5848 -7.7488 -0.9063 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261352248.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:52 Heat of formation + Delta-G solvation = 61.866998 kcal Electronic energy + Delta-G solvation = -16205.295072 eV Core-core repulsion = 13374.544309 eV Total energy + Delta-G solvation = -2830.750763 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.036 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.62726 -39.97630 -37.29249 -36.05558 -35.27467 -33.45942 -31.71119 -30.95507 -28.72127 -25.93196 -24.75694 -23.34804 -22.72818 -19.95370 -18.76121 -18.09366 -17.07885 -16.59322 -16.57481 -16.37024 -15.45425 -15.36001 -14.78363 -14.49894 -14.40147 -13.35485 -13.21967 -12.99791 -12.67265 -12.49917 -12.41545 -12.24134 -12.04643 -11.98303 -11.64742 -11.50927 -11.45124 -10.50190 -9.85357 -9.63056 -9.33800 -8.65333 -6.97317 -0.20345 0.26757 0.56999 0.73652 1.27806 1.36864 1.47626 1.55769 2.14563 2.57358 2.71188 3.20617 3.56666 3.81261 3.94225 4.00611 4.11696 4.30661 4.41840 4.46875 4.62161 4.90316 4.94293 5.09155 5.24756 5.34709 5.40979 5.48481 5.86922 5.94100 6.29101 6.42229 6.93004 8.19830 8.56722 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.029603 B = 0.006190 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.631432 B = 4522.176437 C = 5093.583859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.018 3.982 3 Si 1.007 2.993 4 H -0.257 1.257 5 H -0.259 1.259 6 H -0.253 1.253 7 C -0.412 4.412 8 H 0.098 0.902 9 C 0.292 3.708 10 N -0.331 5.331 11 N -0.220 5.220 12 C -0.147 4.147 13 C 0.185 3.815 14 C -0.055 4.055 15 C -0.091 4.091 16 C -0.106 4.106 17 C -0.088 4.088 18 C -0.117 4.117 19 C -0.028 4.028 20 Cl -0.079 7.079 21 N -0.524 5.524 22 H 0.292 0.708 23 H 0.178 0.822 24 H 0.140 0.860 25 H 0.172 0.828 26 H 0.176 0.824 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.139 -13.271 2.087 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.206 4.206 3 Si 0.824 3.176 4 H -0.181 1.181 5 H -0.183 1.183 6 H -0.176 1.176 7 C -0.449 4.449 8 H 0.116 0.884 9 C 0.054 3.946 10 N -0.191 5.191 11 N -0.071 5.071 12 C -0.318 4.318 13 C 0.022 3.978 14 C -0.057 4.057 15 C -0.110 4.110 16 C -0.124 4.124 17 C -0.106 4.106 18 C -0.136 4.136 19 C -0.056 4.056 20 Cl -0.050 7.050 21 N -0.247 5.247 22 H 0.103 0.897 23 H 0.195 0.805 24 H 0.158 0.842 25 H 0.189 0.811 26 H 0.193 0.807 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.502 -11.992 1.848 13.766 hybrid contribution 0.370 0.282 -0.259 0.532 sum 6.872 -11.710 1.589 13.670 Atomic orbital electron populations 1.70143 1.09237 1.30793 1.26365 1.27239 0.95917 1.05109 0.92333 0.84837 0.78847 0.74030 0.79874 1.18087 1.18319 1.17610 1.19733 0.95614 0.88401 1.41132 0.88400 1.21680 0.88937 0.92473 0.91484 1.74721 1.07038 1.15631 1.21710 1.73272 1.33944 0.96796 1.03095 1.24509 0.93613 0.99480 1.14233 1.21025 0.92044 0.93044 0.91652 1.18534 0.96294 0.92366 0.98512 1.21401 1.00376 0.93382 0.95880 1.21588 0.95100 0.95744 0.99965 1.21688 0.96360 0.99835 0.92743 1.21333 1.00332 0.91254 1.00673 1.21303 0.97352 0.93246 0.93734 1.98382 1.91340 1.62316 1.52980 1.69469 1.39504 0.98334 1.17395 0.89663 0.80484 0.84175 0.81087 0.80651 0.82821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -40.77 11.48 21.84 0.25 -40.52 15 2 C 0.02 0.94 5.49 85.31 0.47 1.41 15 3 Si 1.01 37.85 29.56 68.60 2.03 39.88 15 4 H -0.26 -9.19 7.11 99.48 0.71 -8.48 15 5 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 6 H -0.25 -9.20 7.11 99.48 0.71 -8.50 15 7 C -0.41 -23.34 9.38 23.54 0.22 -23.12 15 8 H 0.10 5.29 7.85 -2.91 -0.02 5.27 15 9 C 0.29 17.40 7.42 135.03 1.00 18.40 15 10 N -0.33 -20.32 9.09 -56.36 -0.51 -20.83 15 11 N -0.22 -12.32 11.62 -55.92 -0.65 -12.97 15 12 C -0.15 -6.97 10.83 85.11 0.92 -6.05 15 13 C 0.18 8.67 5.89 42.15 0.25 8.92 15 14 C -0.05 -1.99 5.66 -20.02 -0.11 -2.10 15 15 C -0.09 -2.44 9.51 22.49 0.21 -2.23 15 16 C -0.11 -1.92 10.03 22.24 0.22 -1.69 15 17 C -0.09 -1.48 10.04 22.31 0.22 -1.25 15 18 C -0.12 -2.74 9.82 22.26 0.22 -2.52 15 19 C -0.03 -0.96 6.33 22.56 0.14 -0.81 15 20 Cl -0.08 -3.05 26.96 -2.72 -0.07 -3.12 15 21 N -0.52 -28.36 8.98 -182.57 -1.64 -30.00 15 22 H 0.29 14.15 8.29 -92.71 -0.77 13.38 15 23 H 0.18 6.75 8.04 -2.91 -0.02 6.73 15 24 H 0.14 3.47 8.02 -2.91 -0.02 3.45 15 25 H 0.17 1.71 8.06 -2.91 -0.02 1.68 15 26 H 0.18 1.41 8.06 -2.91 -0.02 1.39 15 27 H 0.15 2.85 8.06 -2.91 -0.02 2.82 15 Total: -1.00 -73.67 265.81 4.39 -69.29 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.21 Total: 9.34 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 3.77 Total: -11.06 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -2.55 Total: -104.32 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Atomic # 17 Polarization: -3.05 SS G_CDS: -0.07 Total: -3.12 kcal Total: -73.67 4.39 -69.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261352248.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.153 kcal (2) G-P(sol) polarization free energy of solvation -73.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds