Wall clock time and date at job start Mon Mar 30 2020 07:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86804 * 119.99856 * 2 1 4 4 H 1.48497 * 109.47035 * 274.98491 * 3 2 1 5 5 H 1.48501 * 109.46955 * 34.98210 * 3 2 1 6 6 H 1.48499 * 109.47183 * 154.98198 * 3 2 1 7 7 C 1.40069 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00138 * 186.28432 * 7 2 1 9 9 C 1.41561 * 119.99790 * 6.29241 * 7 2 1 10 10 N 1.33682 * 119.66788 * 353.69949 * 9 7 2 11 11 N 1.28695 * 121.38535 * 180.02562 * 10 9 7 12 12 C 1.32391 * 120.62755 * 359.97438 * 11 10 9 13 13 C 1.40274 * 119.29582 * 0.27643 * 12 11 10 14 14 C 1.48276 * 120.64184 * 179.72281 * 13 12 11 15 15 C 1.39412 * 120.11115 * 184.72827 * 14 13 12 16 16 C 1.37965 * 119.88512 * 179.74181 * 15 14 13 17 17 C 1.38463 * 120.11454 * 0.53061 * 16 15 14 18 18 Cl 1.73598 * 119.88768 * 179.69753 * 17 16 15 19 19 C 1.38470 * 120.22287 * 359.72078 * 17 16 15 20 20 C 1.37966 * 120.11091 * 0.02562 * 19 17 16 21 21 N 1.32884 * 118.71316 * 359.42050 * 13 12 11 22 22 H 0.97007 * 120.00183 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.34739 * 180.02562 * 12 11 10 24 24 H 1.08002 * 120.05294 * 359.97438 * 15 14 13 25 25 H 1.08006 * 119.93973 * 180.22984 * 16 15 14 26 26 H 1.07994 * 119.93808 * 179.97438 * 19 17 16 27 27 H 1.08006 * 120.05406 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3829 2.1073 -1.3948 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4122 0.5921 7 6 2.0072 -1.2130 0.0005 8 1 3.0823 -1.2158 0.1029 9 6 1.3058 -2.4353 -0.1333 10 7 -0.0310 -2.4346 -0.1327 11 7 -0.7019 -3.5264 -0.2517 12 6 -0.0813 -4.6888 -0.3795 13 6 1.3210 -4.7220 -0.3783 14 6 2.0467 -6.0081 -0.5133 15 6 3.4367 -6.0408 -0.4121 16 6 4.1067 -7.2407 -0.5332 17 6 3.4018 -8.4096 -0.7657 18 17 4.2515 -9.9150 -0.9249 19 6 2.0215 -8.3817 -0.8722 20 6 1.3417 -7.1876 -0.7475 21 7 1.9866 -3.5780 -0.2599 22 1 -0.4851 0.8401 -0.0004 23 1 -0.6488 -5.6023 -0.4794 24 1 3.9878 -5.1289 -0.2355 25 1 5.1833 -7.2676 -0.4513 26 1 1.4764 -9.2960 -1.0541 27 1 0.2650 -7.1670 -0.8303 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261361010.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:57 Heat of formation + Delta-G solvation = 77.936163 kcal Electronic energy + Delta-G solvation = -15820.154181 eV Core-core repulsion = 12990.100229 eV Total energy + Delta-G solvation = -2830.053952 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.036 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.92749 -38.77150 -36.47796 -34.21849 -33.47773 -31.78081 -30.95263 -29.31710 -26.84669 -24.31699 -23.34505 -21.95735 -21.27823 -18.21747 -17.05441 -16.91833 -15.58176 -15.20956 -14.92732 -14.73323 -13.98981 -13.90685 -13.36895 -13.33257 -13.21856 -11.93662 -11.66652 -11.56060 -11.43996 -11.40312 -11.16529 -10.82010 -10.52763 -10.32921 -10.20142 -9.85970 -9.57598 -8.97016 -8.85144 -7.98269 -7.58250 -6.85533 -5.02749 0.86914 1.40929 2.11378 2.39715 2.46188 2.95594 3.00135 3.01359 3.73471 3.84698 4.46676 4.68785 4.87380 4.94683 5.33067 5.45053 5.54811 5.67829 5.78603 5.83094 5.89126 6.09350 6.29317 6.36216 6.63841 6.80143 6.85860 6.96509 7.16329 7.85449 8.18057 8.27070 8.78210 9.95389 10.47240 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.040591 B = 0.004327 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.639415 B = 6469.518739 C = 7142.612205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.059 3.941 3 Si 0.926 3.074 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.380 4.380 8 H 0.099 0.901 9 C 0.317 3.683 10 N -0.282 5.282 11 N -0.187 5.187 12 C -0.159 4.159 13 C 0.180 3.820 14 C -0.020 4.020 15 C -0.069 4.069 16 C -0.117 4.117 17 C -0.034 4.034 18 Cl -0.082 7.082 19 C -0.116 4.116 20 C -0.087 4.087 21 N -0.527 5.527 22 H 0.284 0.716 23 H 0.143 0.857 24 H 0.146 0.854 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.581 -10.686 -1.221 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.169 4.169 3 Si 0.749 3.251 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.417 4.417 8 H 0.117 0.883 9 C 0.080 3.920 10 N -0.143 5.143 11 N -0.042 5.042 12 C -0.327 4.327 13 C 0.020 3.980 14 C -0.022 4.022 15 C -0.088 4.088 16 C -0.136 4.136 17 C -0.061 4.061 18 Cl -0.053 7.053 19 C -0.135 4.135 20 C -0.107 4.107 21 N -0.251 5.251 22 H 0.095 0.905 23 H 0.160 0.840 24 H 0.163 0.837 25 H 0.151 0.849 26 H 0.151 0.849 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.004 -9.647 -1.116 10.925 hybrid contribution 0.810 -0.346 -0.146 0.893 sum 5.814 -9.993 -1.262 11.630 Atomic orbital electron populations 1.70057 1.07404 1.29311 1.25510 1.26197 0.95169 1.01820 0.93717 0.85992 0.80351 0.79344 0.79426 1.19075 1.19656 1.18081 1.19389 0.95418 0.87378 1.39514 0.88318 1.21273 0.88722 0.91095 0.90904 1.74804 1.06426 1.14542 1.18578 1.73425 1.33139 0.95883 1.01719 1.23933 0.92988 0.99429 1.16371 1.20399 0.91705 0.92084 0.93778 1.18754 0.93109 0.91456 0.98896 1.21397 0.93660 0.97812 0.95961 1.21013 1.00389 0.90808 1.01400 1.21014 0.92691 0.86933 1.05511 1.98349 1.77903 1.32712 1.96339 1.20894 0.91965 0.98731 1.01887 1.21233 1.00595 0.90734 0.98159 1.69191 1.39660 0.98192 1.18049 0.90464 0.83971 0.83658 0.84928 0.84872 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.08 11.48 55.55 0.64 -17.44 15 2 C 0.06 1.44 5.49 -17.35 -0.10 1.35 15 3 Si 0.93 17.60 29.56 -169.99 -5.03 12.58 15 4 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 5 H -0.27 -5.01 7.11 56.52 0.40 -4.61 15 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 7 C -0.38 -9.95 9.38 -37.63 -0.35 -10.30 15 8 H 0.10 2.42 7.86 -52.49 -0.41 2.01 15 9 C 0.32 8.77 7.42 -157.98 -1.17 7.59 15 10 N -0.28 -8.05 9.09 30.83 0.28 -7.77 15 11 N -0.19 -4.93 11.62 30.97 0.36 -4.57 15 12 C -0.16 -3.58 10.75 -16.55 -0.18 -3.76 15 13 C 0.18 4.01 6.76 -82.52 -0.56 3.45 15 14 C -0.02 -0.36 5.87 -104.90 -0.62 -0.98 15 15 C -0.07 -1.11 9.59 -39.24 -0.38 -1.48 15 16 C -0.12 -1.58 9.81 -39.60 -0.39 -1.96 15 17 C -0.03 -0.44 6.32 -39.41 -0.25 -0.69 15 18 Cl -0.08 -0.92 28.95 -51.86 -1.50 -2.42 15 19 C -0.12 -1.45 9.81 -39.60 -0.39 -1.84 15 20 C -0.09 -1.26 9.44 -39.25 -0.37 -1.63 15 21 N -0.53 -13.27 9.65 -9.05 -0.09 -13.35 15 22 H 0.28 6.49 8.29 -40.82 -0.34 6.15 15 23 H 0.14 2.59 6.34 -52.49 -0.33 2.26 15 24 H 0.15 2.43 7.59 -52.49 -0.40 2.04 15 25 H 0.13 1.49 8.06 -52.48 -0.42 1.06 15 26 H 0.13 1.33 8.06 -52.49 -0.42 0.91 15 27 H 0.14 1.75 6.30 -52.48 -0.33 1.42 15 LS Contribution 264.83 15.07 3.99 3.99 Total: -1.00 -29.42 264.83 -7.54 -36.96 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -1.45 Total: 2.27 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -4.75 Total: -10.24 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 1.19 Total: -43.13 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.42 -7.54 -36.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261361010.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.899 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds